Articles | Volume 2, issue 4
https://doi.org/10.5194/soil-2-659-2016
© Author(s) 2016. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
https://doi.org/10.5194/soil-2-659-2016
© Author(s) 2016. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Original research article
| 
15 Dec 2016
Original research article |
| 15 Dec 2016
Three-dimensional soil organic matter distribution, accessibility and microbial respiration in macroaggregates using osmium staining and synchrotron X-ray computed tomography
Barry G. Rawlins
CORRESPONDING AUTHOR
British Geological Survey, Keyworth, Nottingham, NG12 5GG, UK
Joanna Wragg
British Geological Survey, Keyworth, Nottingham, NG12 5GG, UK
Christina Reinhard
Diamond Light Source, Harwell Science & Innovation Campus, Chilton, OX11 0DE, UK
Robert C. Atwood
Diamond Light Source, Harwell Science & Innovation Campus, Chilton, OX11 0DE, UK
Alasdair Houston
SIMBIOS, Abertay University, 40 Bell Street, Dundee DD1 1HG, UK
R. Murray Lark
British Geological Survey, Keyworth, Nottingham, NG12 5GG, UK
Sebastian Rudolph
British Geological Survey, Keyworth, Nottingham, NG12 5GG, UK
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N. A. L. Archer, B. R. Rawlins, B. P. Machant, J. D. Mackay, and P. I. Meldrum
SOIL Discuss., https://doi.org/10.5194/soil-2016-40, https://doi.org/10.5194/soil-2016-40, 2016
Preprint withdrawn
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This study investigates the importance of using techniques, such as soil water release curves, soil shrinkage measurements and field observations to create reference points to determine the best-fit calibrations for estimating volumetric water content (VWC). We also show that calibrating soil moisture sensors in disturbed clay soils over-estimates VWC and we suggest that undisturbed soil cores provide better calibrations to estimate VWC in clay soils.
B. G. Rawlins, B. Palumbo-Roe, D. C. Gooddy, F. Worrall, and H. Smith
Biogeosciences, 11, 1911–1925, https://doi.org/10.5194/bg-11-1911-2014, https://doi.org/10.5194/bg-11-1911-2014, 2014
R. Murray Lark, Elliott M. Hamilton, Belinda Kaninga, Kakoma K. Maseka, Moola Mutondo, Godfrey M. Sakala, and Michael J. Watts
SOIL, 3, 235–244, https://doi.org/10.5194/soil-3-235-2017, https://doi.org/10.5194/soil-3-235-2017, 2017
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An advantage of geostatistics for mapping soil properties is that, given a statistical model of the variable of interest, we can make a rational decision about how densely to sample so that the map is sufficiently precise. However, uncertainty about the statistical model affects this process. In this paper we show how Bayesian methods can be used to support decision making on sampling with an uncertain model, ensuring that the probability of meeting certain levels of precision is high enough.
Katherine J. Dobson, Sophia B. Coban, Samuel A. McDonald, Joanna N. Walsh, Robert C. Atwood, and Philip J. Withers
Solid Earth, 7, 1059–1073, https://doi.org/10.5194/se-7-1059-2016, https://doi.org/10.5194/se-7-1059-2016, 2016
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State-of-the-art synchrotron x-ray imaging was used to observe micron scale transport processes in real time. The 20 Hz 3-D image acquisition rates give experimental data free from motion artefacts, and suitable for detailed quantitative analysis of the dynamic fluid distribution, flow pathways and processes. The method marks a major breakthrough in our ability to capture both sub-second and lower frequency non-equilibrium process in many geological or engineering systems.
N. A. L. Archer, B. R. Rawlins, B. P. Machant, J. D. Mackay, and P. I. Meldrum
SOIL Discuss., https://doi.org/10.5194/soil-2016-40, https://doi.org/10.5194/soil-2016-40, 2016
Preprint withdrawn
Short summary
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This study investigates the importance of using techniques, such as soil water release curves, soil shrinkage measurements and field observations to create reference points to determine the best-fit calibrations for estimating volumetric water content (VWC). We also show that calibrating soil moisture sensors in disturbed clay soils over-estimates VWC and we suggest that undisturbed soil cores provide better calibrations to estimate VWC in clay soils.
R. M. Lark, R. S. Lawley, A. J. M. Barron, D. T. Aldiss, K. Ambrose, A. H. Cooper, J. R. Lee, and C. N. Waters
Solid Earth, 6, 727–745, https://doi.org/10.5194/se-6-727-2015, https://doi.org/10.5194/se-6-727-2015, 2015
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Boundaries on geological maps are drawn by geologists interpreting evidence (boreholes, surface features, etc.) in light of their geological knowledge. Boundaries are therefore uncertain, and this must be quantified so that map users can make sound decisions. In this paper we show how we can find statistical models of the uncertainty of boundary positions by a structured method to elicit the tacit model of uncertainty which experienced field geologists use when interpreting geological maps.
R. M. Lark, S. Thorpe, H. Kessler, and S. J. Mathers
Solid Earth, 5, 1189–1203, https://doi.org/10.5194/se-5-1189-2014, https://doi.org/10.5194/se-5-1189-2014, 2014
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Geological information for users such as planners, miners or engineers depends on limited observations and the interpretative skills of the geologist. It therefore has an attendant uncertainty which must be quantified so that the data user can account for it. In this paper, we describe an experiment to identify and quantify the sources of uncertainty in geologists' interpretations of boreholes along a cross section.
R. M. Lark, D. Clifford, and C. N. Waters
Solid Earth, 5, 631–639, https://doi.org/10.5194/se-5-631-2014, https://doi.org/10.5194/se-5-631-2014, 2014
B. G. Rawlins, B. Palumbo-Roe, D. C. Gooddy, F. Worrall, and H. Smith
Biogeosciences, 11, 1911–1925, https://doi.org/10.5194/bg-11-1911-2014, https://doi.org/10.5194/bg-11-1911-2014, 2014
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What is the stability of additional organic carbon stored thanks to alternative cropping systems and organic waste product application? A multi-method evaluation
Improving measurements of microbial growth, death, and turnover by accounting for extracellular DNA in soils
The influence of land use and management on the behaviour and persistence of soil organic carbon in a subtropical Ferralsol
Dissolved carbon flow to particulate organic carbon enhances soil carbon sequestration
Shifts in controls and abundance of particulate and mineral-associated organic matter fractions among subfield yield stability zones
The six rights of how and when to test for soil C saturation
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Soil carbon, nitrogen, and phosphorus storage in juniper–oak savanna: role of vegetation and geology
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Organic matters, but inorganic matters too: column examination of elevated mercury sorption on low organic matter aquifer material using concentrations and stable isotope ratios
An ensemble estimate of Australian soil organic carbon using machine learning and process-based modelling
Contrasting potential for biological N2 fixation at three polluted central European Sphagnum peat bogs: combining the 15N2-tracer and natural-abundance isotope approaches
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Forest liming in the face of climate change: the implications of restorative liming for soil organic carbon in mature German forests
Biotic factors dominantly determine soil inorganic carbon stock across Tibetan alpine grasslands
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Soil nutrient contents and stoichiometry within aggregate size classes varied with tea plantation age and soil depth in southern Guangxi in China
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Inclusion of biochar in a C dynamics model based on observations from an 8-year field experiment
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Phosphorus dynamics during early soil development in a cold desert: insights from oxygen isotopes in phosphate
Transformation of n-alkanes from plant to soil: a review
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Soil organic carbon mobility in equatorial podzols: soil column experiments
Microbial activity responses to water stress in agricultural soils from simple and complex crop rotations
The role of geochemistry in organic carbon stabilization against microbial decomposition in tropical rainforest soils
Geogenic organic carbon in terrestrial sediments and its contribution to total soil carbon
Aluminous clay and pedogenic Fe oxides modulate aggregation and related carbon contents in soils of the humid tropics
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Stable isotope signatures of soil nitrogen on an environmental–geomorphic gradient within the Congo Basin
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SOIL, 10, 533–549, https://doi.org/10.5194/soil-10-533-2024, https://doi.org/10.5194/soil-10-533-2024, 2024
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Several agroecological management options foster soil organic C stock accrual. What is behind the persistence of this "additional" C? We used three different methodological approaches and >20 years of field experiments under temperate conditions to find out. We found that the additional C is less stable at the pluri-decadal scale than the baseline C. This highlights the need to maintain agroecological practices to keep these carbon stocks at a high level over time.
Jörg Schnecker, Theresa Böckle, Julia Horak, Victoria Martin, Taru Sandén, and Heide Spiegel
SOIL, 10, 521–531, https://doi.org/10.5194/soil-10-521-2024, https://doi.org/10.5194/soil-10-521-2024, 2024
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Microbial processes are driving the formation and decomposition of soil organic matter. In contrast to respiration and growth, microbial death rates currently lack distinct methods to be determined. Here, we propose a new approach to measure microbial death rates. This new approach to determine microbial death rates as well as dynamics of intracellular and extracellular DNA separately will help to improve concepts and models of C dynamics in soils in the future.
Laura Hondroudakis, Peter M. Kopittke, Ram C. Dalal, Meghan Barnard, and Zhe H. Weng
SOIL, 10, 451–465, https://doi.org/10.5194/soil-10-451-2024, https://doi.org/10.5194/soil-10-451-2024, 2024
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Land use change to cropping is known to greatly reduced organic carbon and nitrogen concentrations, but much remains unknown about the mechanisms influencing their persistence in soil. In a soil from a subtropical Australian cropping system, we demonstrate that organic carbon is protected by mineral associations but not particulate forms. Importantly, we also show that reversion from cropping to pasture or plantation can partially restore this organic carbon.
Qintana Si, Kangli Chen, Bin Wei, Yaowen Zhang, Xun Sun, and Junyi Liang
SOIL, 10, 441–450, https://doi.org/10.5194/soil-10-441-2024, https://doi.org/10.5194/soil-10-441-2024, 2024
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Sam J. Leuthold, Jocelyn M. Lavallee, Bruno Basso, William F. Brinton, and M. Francesca Cotrufo
SOIL, 10, 307–319, https://doi.org/10.5194/soil-10-307-2024, https://doi.org/10.5194/soil-10-307-2024, 2024
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We examined physical soil organic matter fractions to understand their relationship to temporal variability in crop yield at field scale. We found that interactions between crop productivity, topography, and climate led to variability in soil organic matter stocks among different yield stability zones. Our results imply that linkages between soil organic matter and yield stability may be scale-dependent and that particulate organic matter may be an indicator of unstable areas within croplands.
Johan Six, Sebastian Doetterl, Moritz Laub, Claude R. Müller, and Marijn Van de Broek
SOIL, 10, 275–279, https://doi.org/10.5194/soil-10-275-2024, https://doi.org/10.5194/soil-10-275-2024, 2024
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Soil C saturation has been tested in several recent studies and led to a debate about its existence. We argue that, to test C saturation, one should pay attention to six fundamental principles: the right measures, the right units, the right dispersive energy and application, the right soil type, the right clay type, and the right saturation level. Once we take care of those six rights across studies, we find support for a maximum of C stabilized by minerals and thus soil C saturation.
Norman Gentsch, Florin Laura Riechers, Jens Boy, Dörte Schweneker, Ulf Feuerstein, Diana Heuermann, and Georg Guggenberger
SOIL, 10, 139–150, https://doi.org/10.5194/soil-10-139-2024, https://doi.org/10.5194/soil-10-139-2024, 2024
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Cover crops have substantial impacts on soil properties, but so far it is not clear how long a legacy effect of cover cropping will remain in the soil. We found that cover crops attenuate negative effects on soil structure that come from soil cultivation. The combination of plants with different litter qualities and rhizodeposits in biodiverse cover crop mixtures can improve the positive effects of cover cropping on soil structure amelioration.
Che-Jen Hsiao, Pedro A. M. Leite, Ayumi Hyodo, and Thomas W. Boutton
SOIL, 10, 93–108, https://doi.org/10.5194/soil-10-93-2024, https://doi.org/10.5194/soil-10-93-2024, 2024
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Tree cover has increased in grasslands worldwide, with juniper and oak trees expanding in the southern Great Plains, USA. Here, we examine how these changes interact with geology to affect soil C, N, and P storage. Soil concentrations of these elements were significantly higher under trees than grasslands but increased more under trees growing on Edwards soils. Our results suggest that geology and vegetation change should be considered when predicting soil storage in dryland ecosystems globally.
Amicie A. Delahaie, Lauric Cécillon, Marija Stojanova, Samuel Abiven, Pierre Arbelet, Dominique Arrouays, François Baudin, Antonio Bispo, Line Boulonne, Claire Chenu, Jussi Heinonsalo, Claudy Jolivet, Kristiina Karhu, Manuel P. Martin, Lorenza Pacini, Christopher Poeplau, Céline Ratié, Pierre Roudier, Nicolas P. A. Saby, Florence Savignac, and Pierre Barré
EGUsphere, https://doi.org/10.5194/egusphere-2024-197, https://doi.org/10.5194/egusphere-2024-197, 2024
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This manuscript compares the soil organic carbon fractions obtained from a new thermal fractionation scheme and a well-known physical fractionation scheme on an unprecedented dataset of French topsoil samples. For each fraction, we use a machine learning model to determine its environmental drivers (pedology, climate, and land cover). Our results suggest that these two fractionation schemes provide different fractions, which means they provide complementary information.
David S. McLagan, Carina Esser, Lorenz Schwab, Jan G. Wiederhold, Jan-Helge Richard, and Harald Biester
SOIL, 10, 77–92, https://doi.org/10.5194/soil-10-77-2024, https://doi.org/10.5194/soil-10-77-2024, 2024
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Sorption of mercury in soils, aquifer materials, and sediments is primarily linked to organic matter. Using column experiments, mercury concentration, speciation, and stable isotope analyses, we show that large quantities of mercury in soil water and groundwater can be sorbed to inorganic minerals; sorption to the solid phase favours lighter isotopes. Data provide important insights on the transport and fate of mercury in soil–groundwater systems and particularly in low-organic-matter systems.
Lingfei Wang, Gab Abramowitz, Ying-Ping Wang, Andy Pitman, and Raphael Viscarra Rossel
EGUsphere, https://doi.org/10.5194/egusphere-2023-3016, https://doi.org/10.5194/egusphere-2023-3016, 2024
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Effective managements of soil organic carbon require accurate knowledge of its existing distribution and influential factors of carbon dynamics. We identify the importance of variables on carbon variation and estimate SOC stocks in Australia using various models. We find there are significant disparities in SOC estimates when different models are used, highlighting the need for a critical re-evaluation of land management strategies that rely on SOC distribution derived from a single approach.
Marketa Stepanova, Martin Novak, Bohuslava Cejkova, Ivana Jackova, Frantisek Buzek, Frantisek Veselovsky, Jan Curik, Eva Prechova, Arnost Komarek, and Leona Bohdalkova
SOIL, 9, 623–640, https://doi.org/10.5194/soil-9-623-2023, https://doi.org/10.5194/soil-9-623-2023, 2023
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Biological N2 fixation helps to sustain carbon accumulation in peatlands and to remove CO2 from the atmosphere. Changes in N2 fixation may affect the dynamics of global change. Increasing inputs of reactive N from air pollution should lead to downregulation of N2 fixation. Data from three N-polluted peat bogs show an interplay of N2-fixation rates with 10 potential drivers of this process. N2 fixation was measurable only at one site characterized by high phosphorus and low sulfate availability.
Tatjana C. Speckert, Jeannine Suremann, Konstantin Gavazov, Maria J. Santos, Frank Hagedorn, and Guido L. B. Wiesenberg
SOIL, 9, 609–621, https://doi.org/10.5194/soil-9-609-2023, https://doi.org/10.5194/soil-9-609-2023, 2023
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Soil organic carbon (SOC) is key player in the global carbon cycle. Afforestation on pastures potentially alters organic matter input and SOC sequestration. We investigated the effects of a Picea abies L. afforestation sequence (0 to 130 years) on a former subalpine pasture on SOC stocks and dynamics. We found no difference in the SOC stock after 130 years of afforestation and thus no additional SOC sequestration. SOC composition was altered due to a modified SOC input following afforestation.
Lauren M. Gillespie, Nathalie Y. Triches, Diego Abalos, Peter Finke, Sophie Zechmeister-Boltenstern, Stephan Glatzel, and Eugenio Díaz-Pinés
SOIL, 9, 517–531, https://doi.org/10.5194/soil-9-517-2023, https://doi.org/10.5194/soil-9-517-2023, 2023
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Forest soil is potentially an important source or sink of greenhouse gases (CO2, N2O, and CH4), but this is affected by soil conditions. We studied how land inclination and soil/litter properties influence the flux of these gases. CO2 and N2O were more affected by inclination than CH4; all were affected by soil/litter properties. This study underlines the importance of inclination and soil/litter properties in predicting greenhouse gas fluxes from forest soil and potential source–sink balance.
Sastrika Anindita, Peter Finke, and Steven Sleutel
SOIL, 9, 443–459, https://doi.org/10.5194/soil-9-443-2023, https://doi.org/10.5194/soil-9-443-2023, 2023
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This study investigated how land use, through its impact on soil geochemistry, might indirectly control soil organic carbon (SOC) content in tropical volcanic soils in Indonesia. We analyzed SOC fractions, substrate-specific mineralization, and net priming of SOC. Our results indicated that the enhanced formation of aluminum (hydr)oxides promoted aggregation and physical occlusion of OC, which is consistent with the lesser degradability of SOC in agricultural soils.
Amicie A. Delahaie, Pierre Barré, François Baudin, Dominique Arrouays, Antonio Bispo, Line Boulonne, Claire Chenu, Claudy Jolivet, Manuel P. Martin, Céline Ratié, Nicolas P. A. Saby, Florence Savignac, and Lauric Cécillon
SOIL, 9, 209–229, https://doi.org/10.5194/soil-9-209-2023, https://doi.org/10.5194/soil-9-209-2023, 2023
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We characterized organic matter in French soils by analysing samples from the French RMQS network using Rock-Eval thermal analysis. We found that thermal analysis is appropriate to characterize large set of samples (ca. 2000) and provides interpretation references for Rock-Eval parameter values. This shows that organic matter in managed soils is on average more oxidized and more thermally stable and that some Rock-Eval parameters are good proxies for organic matter biogeochemical stability.
Britta Greenshields, Barbara von der Lühe, Harold J. Hughes, Christian Stiegler, Suria Tarigan, Aiyen Tjoa, and Daniela Sauer
SOIL, 9, 169–188, https://doi.org/10.5194/soil-9-169-2023, https://doi.org/10.5194/soil-9-169-2023, 2023
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Silicon (Si) research could provide complementary measures in sustainably cultivating oil-palm monocultures. Our study shows that current oil-palm management practices and topsoil erosion on oil-palm plantations in Indonesia have caused a spatial distribution of essential Si pools in soil. A lack of well-balanced Si levels in topsoil could negatively affect crop yield and soil fertility for future replanting at the same plantation site. Potential measures are suggested to maintain Si cycling.
Kenji Fujisaki, Tiphaine Chevallier, Antonio Bispo, Jean-Baptiste Laurent, François Thevenin, Lydie Chapuis-Lardy, Rémi Cardinael, Christine Le Bas, Vincent Freycon, Fabrice Bénédet, Vincent Blanfort, Michel Brossard, Marie Tella, and Julien Demenois
SOIL, 9, 89–100, https://doi.org/10.5194/soil-9-89-2023, https://doi.org/10.5194/soil-9-89-2023, 2023
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This paper presents a first comprehensive thesaurus for management practices driving soil organic carbon (SOC) storage. So far, a comprehensive thesaurus of management practices in agriculture and forestry has been lacking. It will help to merge datasets, a promising way to evaluate the impacts of management practices in agriculture and forestry on SOC. Identifying the drivers of SOC stock changes is of utmost importance to contribute to global challenges (climate change, food security).
Oliver van Straaten, Larissa Kulp, Guntars O. Martinson, Dan Paul Zederer, and Ulrike Talkner
SOIL, 9, 39–54, https://doi.org/10.5194/soil-9-39-2023, https://doi.org/10.5194/soil-9-39-2023, 2023
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Across northern Europe, millions of hectares of forest have been limed to counteract soil acidification and restore forest ecosystems. In this study, we investigated how restorative liming affects the forest soil organic carbon (SOC) stocks and correspondingly ecosystem greenhouse gas fluxes. We found that the magnitude and direction of SOC stock changes hinge on the inherent site characteristics, namely, forest type, soil texture, initial soil pH, and initial soil SOC stocks (before liming).
Junxiao Pan, Jinsong Wang, Dashuan Tian, Ruiyang Zhang, Yang Li, Lei Song, Jiaming Yang, Chunxue Wei, and Shuli Niu
SOIL, 8, 687–698, https://doi.org/10.5194/soil-8-687-2022, https://doi.org/10.5194/soil-8-687-2022, 2022
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We found that climatic, edaphic, plant and microbial variables jointly affect soil inorganic carbon (SIC) stock in Tibetan grasslands, and biotic factors have a larger contribution than abiotic factors to the variation in SIC stock. The effects of microbial and plant variables on SIC stock weakened with soil depth, while the effects of edaphic variables strengthened. The contrasting responses and drivers of SIC stock highlight differential mechanisms underlying SIC preservation with soil depth.
Yifeng Zhang, Sen Dou, Batande Sinovuyo Ndzelu, Rui Ma, Dandan Zhang, Xiaowei Zhang, Shufen Ye, and Hongrui Wang
SOIL, 8, 605–619, https://doi.org/10.5194/soil-8-605-2022, https://doi.org/10.5194/soil-8-605-2022, 2022
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How to effectively convert corn straw into humic substances and return them to the soil in a relatively stable form is a concerning topic. Through a 360 d field experiment under equal carbon (C) mass, we found that return of the fermented corn straw treated with Trichoderma reesei to the field is more valuable and conducive to increasing easily oxidizable organic C, humus C content, and carbon pool management index than the direct application of corn straw.
Ling Mao, Shaoming Ye, and Shengqiang Wang
SOIL, 8, 487–505, https://doi.org/10.5194/soil-8-487-2022, https://doi.org/10.5194/soil-8-487-2022, 2022
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Soil ecological stoichiometry offers a tool to explore the distribution, cycling, limitation, and balance of chemical elements. This study improved the understanding of soil organic carbon and nutrient dynamics in tea plantation ecosystems and also provided supplementary information for soil ecological stoichiometry in global terrestrial ecosystems.
Steffen Schlüter, Tim Roussety, Lena Rohe, Vusal Guliyev, Evgenia Blagodatskaya, and Thomas Reitz
SOIL, 8, 253–267, https://doi.org/10.5194/soil-8-253-2022, https://doi.org/10.5194/soil-8-253-2022, 2022
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We combined microstructure analysis via X-ray CT with carbon mineralization analysis via respirometry of intact soil cores from different land uses. We found that the amount of particulate organic matter (POM) exerted a dominant control on carbon mineralization in well-aerated topsoils, whereas soil moisture and macroporosity did not play role. This is because carbon mineralization mainly occurs in microbial hotspots around degrading POM, where it is decoupled from conditions of the bulk soil.
Roberta Pulcher, Enrico Balugani, Maurizio Ventura, Nicolas Greggio, and Diego Marazza
SOIL, 8, 199–211, https://doi.org/10.5194/soil-8-199-2022, https://doi.org/10.5194/soil-8-199-2022, 2022
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Biochar, a solid product from the thermal conversion of biomass, can be used as a climate change mitigation strategy, since it can sequester carbon from the atmosphere and store it in the soil. The aim of this study is to assess the potential of biochar as a mitigation strategy in the long term, by modelling the results obtained from an 8-year field experiment. As far as we know, this is the first time that a model for biochar degradation has been validated with long-term field data.
Daniel Rath, Nathaniel Bogie, Leonardo Deiss, Sanjai J. Parikh, Daoyuan Wang, Samantha Ying, Nicole Tautges, Asmeret Asefaw Berhe, Teamrat A. Ghezzehei, and Kate M. Scow
SOIL, 8, 59–83, https://doi.org/10.5194/soil-8-59-2022, https://doi.org/10.5194/soil-8-59-2022, 2022
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Storing C in subsoils can help mitigate climate change, but this requires a better understanding of subsoil C dynamics. We investigated changes in subsoil C storage under a combination of compost, cover crops (WCC), and mineral fertilizer and found that systems with compost + WCC had ~19 Mg/ha more C after 25 years. This increase was attributed to increased transport of soluble C and nutrients via WCC root pores and demonstrates the potential for subsoil C storage in tilled agricultural systems.
Zuzana Frkova, Chiara Pistocchi, Yuliya Vystavna, Katerina Capkova, Jiri Dolezal, and Federica Tamburini
SOIL, 8, 1–15, https://doi.org/10.5194/soil-8-1-2022, https://doi.org/10.5194/soil-8-1-2022, 2022
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Phosphorus (P) is essential for life. We studied microbial processes driving the P cycle in soils developed on the same rock but with different ages (0–100 years) in a cold desert. Compared to previous studies under cold climate, we found much slower weathering of P-containing minerals of soil development, likely due to aridity. However, microbes dominate short-term dynamics and progressively redistribute P from the rock into more available forms, making it available for plants at later stages.
Carrie L. Thomas, Boris Jansen, E. Emiel van Loon, and Guido L. B. Wiesenberg
SOIL, 7, 785–809, https://doi.org/10.5194/soil-7-785-2021, https://doi.org/10.5194/soil-7-785-2021, 2021
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Plant organs, such as leaves, contain a variety of chemicals that are eventually deposited into soil and can be useful for studying organic carbon cycling. We performed a systematic review of available data of one type of plant-derived chemical, n-alkanes, to determine patterns of degradation or preservation from the source plant to the soil. We found that while there was degradation in the amount of n-alkanes from plant to soil, some aspects of the chemical signature were preserved.
Benjamin Bukombe, Peter Fiener, Alison M. Hoyt, Laurent K. Kidinda, and Sebastian Doetterl
SOIL, 7, 639–659, https://doi.org/10.5194/soil-7-639-2021, https://doi.org/10.5194/soil-7-639-2021, 2021
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Through a laboratory incubation experiment, we investigated the spatial patterns of specific maximum heterotrophic respiration in tropical African mountain forest soils developed from contrasting parent material along slope gradients. We found distinct differences in soil respiration between soil depths and geochemical regions related to soil fertility and the chemistry of the soil solution. The topographic origin of our samples was not a major determinant of the observed rates of respiration.
Patricia Merdy, Yves Lucas, Bruno Coulomb, Adolpho J. Melfi, and Célia R. Montes
SOIL, 7, 585–594, https://doi.org/10.5194/soil-7-585-2021, https://doi.org/10.5194/soil-7-585-2021, 2021
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Transfer of organic C from topsoil to deeper horizons and the water table is little documented, especially in equatorial environments, despite high primary productivity in the evergreen forest. Using column experiments with podzol soil and a percolating solution sampled in an Amazonian podzol area, we show how the C-rich Bh horizon plays a role in natural organic matter transfer and Si, Fe and Al mobility after a kaolinitic layer transition, thus giving insight to the genesis of tropical podzol.
Jörg Schnecker, D. Boone Meeden, Francisco Calderon, Michel Cavigelli, R. Michael Lehman, Lisa K. Tiemann, and A. Stuart Grandy
SOIL, 7, 547–561, https://doi.org/10.5194/soil-7-547-2021, https://doi.org/10.5194/soil-7-547-2021, 2021
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Drought and flooding challenge agricultural systems and their management globally. Here we investigated the response of soils from long-term agricultural field sites with simple and diverse crop rotations to either drought or flooding. We found that irrespective of crop rotation complexity, soil and microbial properties were more resistant to flooding than to drought and highly resilient to drought and flooding during single or repeated stress pulses.
Mario Reichenbach, Peter Fiener, Gina Garland, Marco Griepentrog, Johan Six, and Sebastian Doetterl
SOIL, 7, 453–475, https://doi.org/10.5194/soil-7-453-2021, https://doi.org/10.5194/soil-7-453-2021, 2021
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In deeply weathered tropical rainforest soils of Africa, we found that patterns of soil organic carbon stocks differ between soils developed from geochemically contrasting parent material due to differences in the abundance of organo-mineral complexes, the presence/absence of chemical stabilization mechanisms of carbon with minerals and the presence of fossil organic carbon from sedimentary rocks. Physical stabilization mechanisms by aggregation provide additional protection of soil carbon.
Fabian Kalks, Gabriel Noren, Carsten W. Mueller, Mirjam Helfrich, Janet Rethemeyer, and Axel Don
SOIL, 7, 347–362, https://doi.org/10.5194/soil-7-347-2021, https://doi.org/10.5194/soil-7-347-2021, 2021
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Sedimentary rocks contain organic carbon that may end up as soil carbon. However, this source of soil carbon is overlooked and has not been quantified sufficiently. We analysed 10 m long sediment cores with three different sedimentary rocks. All sediments contain considerable amounts of geogenic carbon contributing 3 %–12 % to the total soil carbon below 30 cm depth. The low 14C content of geogenic carbon can result in underestimations of soil carbon turnover derived from 14C data.
Maximilian Kirsten, Robert Mikutta, Didas N. Kimaro, Karl-Heinz Feger, and Karsten Kalbitz
SOIL, 7, 363–375, https://doi.org/10.5194/soil-7-363-2021, https://doi.org/10.5194/soil-7-363-2021, 2021
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Mineralogical combinations of aluminous clay and pedogenic Fe oxides revealed significant effects on soil structure and related organic carbon (OC) storage.
The mineralogical combination resulting in the largest aggregate stability does not better preserve OC during conversion of forests into croplands.
Structural changes in the direction of smaller mean weight diameters do not cancel out the stabilizing effect of soil minerals.
Sophie F. von Fromm, Alison M. Hoyt, Markus Lange, Gifty E. Acquah, Ermias Aynekulu, Asmeret Asefaw Berhe, Stephan M. Haefele, Steve P. McGrath, Keith D. Shepherd, Andrew M. Sila, Johan Six, Erick K. Towett, Susan E. Trumbore, Tor-G. Vågen, Elvis Weullow, Leigh A. Winowiecki, and Sebastian Doetterl
SOIL, 7, 305–332, https://doi.org/10.5194/soil-7-305-2021, https://doi.org/10.5194/soil-7-305-2021, 2021
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We investigated various soil and climate properties that influence soil organic carbon (SOC) concentrations in sub-Saharan Africa. Our findings indicate that climate and geochemistry are equally important for explaining SOC variations. The key SOC-controlling factors are broadly similar to those for temperate regions, despite differences in soil development history between the two regions.
Claudia Cagnarini, Stephen Lofts, Luigi Paolo D'Acqui, Jochen Mayer, Roman Grüter, Susan Tandy, Rainer Schulin, Benjamin Costerousse, Simone Orlandini, and Giancarlo Renella
SOIL, 7, 107–123, https://doi.org/10.5194/soil-7-107-2021, https://doi.org/10.5194/soil-7-107-2021, 2021
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Application of organic amendments, although considered a sustainable form of soil fertilisation, may cause an accumulation of trace elements (TEs) in the topsoil. In this research, we analysed the concentration of zinc, copper, lead and cadmium in a > 60-year experiment in Switzerland and showed that the dynamic model IDMM adequately predicted the historical TE concentrations in plots amended with farmyard manure, sewage sludge and compost and produced reasonable concentration trends up to 2100.
Simon Baumgartner, Marijn Bauters, Matti Barthel, Travis W. Drake, Landry C. Ntaboba, Basile M. Bazirake, Johan Six, Pascal Boeckx, and Kristof Van Oost
SOIL, 7, 83–94, https://doi.org/10.5194/soil-7-83-2021, https://doi.org/10.5194/soil-7-83-2021, 2021
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We compared stable isotope signatures of soil profiles in different forest ecosystems within the Congo Basin to assess ecosystem-level differences in N cycling, and we examined the local effect of topography on the isotopic signature of soil N. Soil δ15N profiles indicated that the N cycling in in the montane forest is more closed, whereas the lowland forest and Miombo woodland experienced a more open N cycle. Topography only alters soil δ15N values in forests with high erosional forces.
Rota Wagai, Masako Kajiura, and Maki Asano
SOIL, 6, 597–627, https://doi.org/10.5194/soil-6-597-2020, https://doi.org/10.5194/soil-6-597-2020, 2020
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Global significance of metals (extractable Fe and Al phases) to control organic matter (OM) in recognized. Next key questions include the identification of their localization and mechanism behind OM–metal relationships. Across 23 soils of contrasting mineralogy, Fe and Al phases were mainly associated with microbially processed OM as meso-density microaggregates. OM- and metal-rich nanocomposites with a narrow OM : metal ratio likely acted as binding agents. A new conceptual model was proposed.
Marco Panettieri, Denis Courtier-Murias, Cornelia Rumpel, Marie-France Dignac, Gonzalo Almendros, and Abad Chabbi
SOIL, 6, 435–451, https://doi.org/10.5194/soil-6-435-2020, https://doi.org/10.5194/soil-6-435-2020, 2020
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In the context of global change, soil has been identified as a potential C sink, depending on land-use strategies. This work is devoted to identifying the processes affecting labile soil C pools resulting from changes in land use. We show that the land-use change in ley grassland provoked a decoupling of the storage and degradation processes after the grassland phase. Overall, the study enables us to develop a sufficient understanding of fine-scale C dynamics to refine soil C prediction models.
Miriam Groß-Schmölders, Pascal von Sengbusch, Jan Paul Krüger, Kristy Klein, Axel Birkholz, Jens Leifeld, and Christine Alewell
SOIL, 6, 299–313, https://doi.org/10.5194/soil-6-299-2020, https://doi.org/10.5194/soil-6-299-2020, 2020
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Degradation turns peatlands into a source of CO2. There is no cost- or time-efficient method available for indicating peatland hydrology or the success of restoration. We found that 15N values have a clear link to microbial communities and degradation. We identified trends in natural, drained and rewetted conditions and concluded that 15N depth profiles can act as a reliable and efficient tool for obtaining information on current hydrology, restoration success and drainage history.
Martin Erlandsson Lampa, Harald U. Sverdrup, Kevin H. Bishop, Salim Belyazid, Ali Ameli, and Stephan J. Köhler
SOIL, 6, 231–244, https://doi.org/10.5194/soil-6-231-2020, https://doi.org/10.5194/soil-6-231-2020, 2020
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In this study, we demonstrate how new equations describing base cation release from mineral weathering can reproduce patterns in observations from stream and soil water. This is a major step towards modeling base cation cycling on the catchment scale, which would be valuable for defining the highest sustainable rates of forest harvest and levels of acidifying deposition.
Benjamin Andrieux, David Paré, Julien Beguin, Pierre Grondin, and Yves Bergeron
SOIL, 6, 195–213, https://doi.org/10.5194/soil-6-195-2020, https://doi.org/10.5194/soil-6-195-2020, 2020
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Our study aimed to disentangle the contribution of several drivers to explaining the proportion of soil carbon that can be released to CO2 through microbial respiration. We found that boreal-forest soil chemistry is an important driver of the amount of carbon that microbes can process. Our results emphasize the need to include the effects of soil chemistry into models of carbon cycling to better anticipate the role played by boreal-forest soils in carbon-cycle–climate feedbacks.
Jonathan Sanderman and A. Stuart Grandy
SOIL, 6, 131–144, https://doi.org/10.5194/soil-6-131-2020, https://doi.org/10.5194/soil-6-131-2020, 2020
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Soils contain one of the largest and most dynamic pools of carbon on Earth, yet scientists still struggle to understand the reactivity and fate of soil organic matter upon disturbance. In this study, we found that with increasing thermal stability, the turnover time of organic matter increased from decades to centuries with a concurrent shift in chemical composition. In this proof-of-concept study, we found that ramped thermal analyses can provide new insights for understanding soil carbon.
Carlos Alberto Quesada, Claudia Paz, Erick Oblitas Mendoza, Oliver Lawrence Phillips, Gustavo Saiz, and Jon Lloyd
SOIL, 6, 53–88, https://doi.org/10.5194/soil-6-53-2020, https://doi.org/10.5194/soil-6-53-2020, 2020
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Amazon soils hold as much carbon (C) as is contained in the vegetation. In this work we sampled soils across 8 different Amazonian countries to try to understand which soil properties control current Amazonian soil C concentrations. We confirm previous knowledge that highly developed soils hold C through clay content interactions but also show a previously unreported mechanism of soil C stabilization in the younger Amazonian soil types which hold C through aluminium organic matter interactions.
Songyu Yang, Boris Jansen, Samira Absalah, Rutger L. van Hall, Karsten Kalbitz, and Erik L. H. Cammeraat
SOIL, 6, 1–15, https://doi.org/10.5194/soil-6-1-2020, https://doi.org/10.5194/soil-6-1-2020, 2020
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Soils store large carbon and are important for global warming. We do not know what factors are important for soil carbon storage in the alpine Andes or how they work. We studied how rainfall affects soil carbon storage related to soil structure. We found soil structure is not important, but soil carbon storage and stability controlled by rainfall is dependent on rocks under the soils. The results indicate that we should pay attention to the rocks when we study soil carbon storage in the Andes.
Samuel Bouchoms, Zhengang Wang, Veerle Vanacker, and Kristof Van Oost
SOIL, 5, 367–382, https://doi.org/10.5194/soil-5-367-2019, https://doi.org/10.5194/soil-5-367-2019, 2019
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Soil erosion has detrimental effects on soil fertility which can reduce carbon inputs coming from crops to soils. Our study integrated this effect into a model linking soil organic carbon (SOC) dynamics to erosion and crop productivity. When compared to observations, the inclusion of productivity improved SOC loss predictions. Over centuries, ignoring crop productivity evolution in models could result in underestimating SOC loss and overestimating C exchanged with the atmosphere.
Nicholas P. Rosenstock, Johan Stendahl, Gregory van der Heijden, Lars Lundin, Eric McGivney, Kevin Bishop, and Stefan Löfgren
SOIL, 5, 351–366, https://doi.org/10.5194/soil-5-351-2019, https://doi.org/10.5194/soil-5-351-2019, 2019
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Biofuel harvests from forests involve large removals of available nutrients, necessitating accurate measurements of soil nutrient stocks. We found that dilute hydrochloric acid extractions from soils released far more Ca, Na, and K than classical salt–extracted exchangeable nutrient pools. The size of these acid–extractable pools may indicate that forest ecosystems could sustain greater biomass extractions of Ca, Mg, and K than are predicted from salt–extracted exchangeable base cation pools.
Tiphaine Chevallier, Kenji Fujisaki, Olivier Roupsard, Florian Guidat, Rintaro Kinoshita, Elias de Melo Viginio Filho, Peter Lehner, and Alain Albrecht
SOIL, 5, 315–332, https://doi.org/10.5194/soil-5-315-2019, https://doi.org/10.5194/soil-5-315-2019, 2019
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Soil organic carbon (SOC) is the largest terrestrial C stock. Andosols of volcanic areas hold particularly large stocks (e.g. from 24 to 72 kgC m−2 in the upper 2 m of soil) as determined via MIR spectrometry at our Costa Rican study site: a 1 km2 basin covered by coffee agroforestry. Andic soil properties explained this high variability, which did not correlate with stocks in the upper 20 cm of soil. Topography and pedogenesis are needed to understand the SOC stocks at landscape scales.
Katelyn A. Congreves, Trang Phan, and Richard E. Farrell
SOIL, 5, 265–274, https://doi.org/10.5194/soil-5-265-2019, https://doi.org/10.5194/soil-5-265-2019, 2019
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There are surprising grey areas in the precise quantification of pathways that produce nitrous oxide, a potent greenhouse gas, as influenced by soil moisture. Here, we take a new look at a classic study but use isotopomers as a powerful tool to determine the source pathways of nitrous oxide as regulated by soil moisture. Our results support earlier research, but we contribute scientific advancements by providing models that enable quantifying source partitioning rather than just inferencing.
Eric McGivney, Jon Petter Gustafsson, Salim Belyazid, Therese Zetterberg, and Stefan Löfgren
SOIL, 5, 63–77, https://doi.org/10.5194/soil-5-63-2019, https://doi.org/10.5194/soil-5-63-2019, 2019
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Forest management may lead to long-term soil acidification due to the removal of base cations during harvest. By means of the HD-MINTEQ model, we compared the acidification effects of harvesting with the effects of historical acid rain at three forested sites in Sweden. The effects of harvesting on pH were predicted to be much smaller than those resulting from acid deposition during the 20th century. There were only very small changes in predicted weathering rates due to acid rain or harvest.
Veronika Kronnäs, Cecilia Akselsson, and Salim Belyazid
SOIL, 5, 33–47, https://doi.org/10.5194/soil-5-33-2019, https://doi.org/10.5194/soil-5-33-2019, 2019
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Weathering rates in forest soils are important for sustainable forestry but cannot be measured. In this paper, we have modelled weathering with the commonly used PROFILE model as well as with the dynamic model ForSAFE, better suited to a changing climate with changing human activities but never before tested for weathering calculations. We show that ForSAFE gives comparable weathering rates to PROFILE and that it shows the variation in weathering with time and works well for scenario modelling.
Cited articles
Arganda-Carreras, I., Fernández-González, R., Muñoz-Barrutia, A., and Ortiz-De-Solorzano, C.: 3D reconstruction of histological sections: Application to mammary gland tissue, Microsc. Res. Techniq., 73, 1019–1029, https://doi.org/10.1002/jemt.20829, 2010.
Chenu, C., Hassink, J., and Bloem, J.: Short-term changes in the spatial distribution of microorganisms in soil aggregates as affected by glucose addition, Biol. Fert. Soil., 34, 349–356, 2001.
Cox, P., Betts, R., Jones, C., Spall, S., and Totterdell, I.: Acceleration of global warming due to carbon-cycle feedbacks in a coupled climate model, Nature, 408, 184–187, 2000.
Davidson, E. and Janssens, I.: Temperature sensitivity of soil carbon decomposition and feedbacks to climate change, Nature, 440, 165–173, https://doi.org/10.1038/nature04514, 2006.
Doube, M., Kłosowski, M. M., Arganda-Carreras, I., Cordelières, F. P., Dougherty, R. P., Jackson, J. S., Schmid, B., Hutchinson, J. R., and Shefelbine, S. J.: BoneJ: Free and extensible bone image analysis in ImageJ, Bone, 47, 1076–1079, https://doi.org/10.1016/j.bone.2010.08.023, 2010.
Dungait, J. A. J., Hopkins, D. W., Gregory, A. S., and Whitmore, A. P.: Soil organic matter turnover is governed by accessibility not recalcitrance, Glob. Change Biol., 18, 1781–1796, https://doi.org/10.1111/j.1365-2486.2012.02665.x, 2012.
Falconer, R. E., Battaia, G., Schmidt, S., Baveye, P., Chenu, C., and Otten, W.: Microscale Heterogeneity Explains Experimental Variability and Non-Linearity in Soil Organic Matter Mineralisation, PLoS ONE, 10, e0123774, https://doi.org/10.1371/journal.pone.0123774, 2015.
Hall, D., Reeve, M., Thomasson, A., and Wright, V.: Water retention, porosity and density of field soils, Soil Survey Technical Monograph No. 9, Rothamsted Experimental Station, Harpenden, 1–75, 1977.
Hapca, S., Baveye, P. C., Wilson, C., Lark, R. M., and Otten, W.: Three-Dimensional Mapping of Soil Chemical Characteristics at Micrometric Scale by Combining 2D SEM-EDX Data and 3D X-Ray CT Images, PLOS ONE, 10, 1–17, https://doi.org/10.1371/journal.pone.0137205, 2015.
Hijmans, R. J.: raster: Geographic data analysis and modeling, http://CRAN.R-project.org/package=raster (last access: 21 October 2016), r package version 2.3-0, 2014.
Hirano, T., Kim, H., and Tanaka, Y.: Long-term half-hourly measurement of soil CO2 concentration and soil respiration in a temperate deciduous forest, J. Geophys. Res.-Atmos., 108, 4631, https://doi.org/10.1029/2003JD003766, 2003.
Hodgson, J. M.: Soil Survey Field Handbook, Technical Monograph No. 5, Rothamsted Experimental Station, Harpenden, 1–86, 1974.
Juarez, S., Nunan, N., Duday, A.-C., Pouteau, V., Schmidt, S., Hapca, S., Falconer, R., Otten, W., and Chenu, C.: Effects of different soil structures on the decomposition of native and added organic carbon, Eur. J. Soil Biol., 58, 81–90, https://doi.org/10.1016/j.ejsobi.2013.06.005, 2013.
Killham, K., Amato, M., and Ladd, J.: Effect of substrate location in soil and soil pore-water regime on carbon turnover, Soil Biol. Biochem., 25, 57–62, https://doi.org/10.1016/0038-0717(93)90241-3, 1993.
Kravchenko, A. N., Negassa, W. C., Guber, A. K., and Rivers, M. L.: Protection of soil carbon within macro-aggregates depends on intra-aggregate pore characteristics, Scientific Reports, 5, 16261, https://doi.org/10.1038/srep16261, 2015.
Lark, R. M., Rawlins, B. G., Robinson, D. A., Lebron, I., and Tye, A. M.: Implications of short-range spatial variation of soil bulk density for adequate field-sampling protocols: methodology and results from two contrasting soils, Eur. J. Soil Sci., 65, 803–814, https://doi.org/10.1111/ejss.12178, 2014.
Lehmann, J., Kinyangi, J., and Solomon, D.: Organic matter stabilization in soil microaggregates: implications from spatial heterogeneity of organic carbon contents and carbon forms, Biogeochemistry, 85, 45–57, https://doi.org/10.1007/s10533-007-9105-3, 2007.
Leue, M., Ellerbrock, R. H., and Gerke, H. H.: DRIFT mapping of organic matter composition at intact soil aggregate surfaces (in Preferential flow), Vadose Zone J., 9, 317–324, 2010.
Li, Y., Liu, Y., Wu, S., Niu, L., and Tian, Y.: Microbial properties explain temporal variation in soil respiration in a grassland subjected to nitrogen addition, Scientific Reports, 5, 18496, https://doi.org/10.1038/srep18496, 2015.
Mayer, L. M., Schick, L. L., Hardy, K. R., Wagai, R., and McCarthy, J.: Organic matter in small mesopores in sediments and soils, Geochim. Cosmochim. Ac., 68, 3863–3872, https://doi.org/10.1016/j.gca.2004.03.019, 2004.
Monga, O., Bousso, M., Garnier, P., and Pot, V.: 3D geometric structures and biological activity: Application to microbial soil organic matter decomposition in pore space, Ecol. Model., 216, 291–302, https://doi.org/10.1016/j.ecolmodel.2008.04.015, 2008.
Moyano, F. E., Vasilyeva, N., Bouckaert, L., Cook, F., Craine, J., Curiel Yuste, J., Don, A., Epron, D., Formanek, P., Franzluebbers, A., Ilstedt, U., Kätterer, T., Orchard, V., Reichstein, M., Rey, A., Ruamps, L., Subke, J.-A., Thomsen, I. K., and Chenu, C.: The moisture response of soil heterotrophic respiration: interaction with soil properties, Biogeosciences, 9, 1173–1182, https://doi.org/10.5194/bg-9-1173-2012, 2012.
Negassa, W. C., Guber, A. K., Kravchenko, A. N., Marsh, T. L., Hildebrandt, B., and Rivers, M. L.: Properties of Soil Pore Space Regulate Pathways of Plant Residue Decomposition and Community Structure of Associated Bacteria, PLOS ONE, 10, e0123999, https://doi.org/10.1371/journal.pone.0123999, 2015.
Ohser, J. and Mucklich, F.: Statistical Analysis of Microstructures in Materials Science, John Wiley & Sons, 404 pp., 2000.
Pebesma, E. J.: Multivariable geostatistics in S: the gstat package, Comput. Geosci., 30, 683–691, 2004.
Peth, S., Chenu, C., Leblond, N., Mordhorst, A., Garnier, P., Nunan, N., Pot, V., Ogurreck, M., and Beckmann, F.: Localization of soil organic matter in soil aggregates using synchrotron-based X-ray microtomography, Soil Biol. Biochem., 78, 189–194, https://doi.org/10.1016/j.soilbio.2014.07.024, 2014.
Pribyl, D. W.: A critical review of the conventional {SOC} to {SOM} conversion factor, Geoderma, 156, 75–83, https://doi.org/10.1016/j.geoderma.2010.02.003, 2010.
R Core Team: R: A Language and Environment for Statistical Computing, R Foundation for Statistical Computing, Vienna, Austria, http://www.R-project.org/ (last access: 21 October 2016), 2013.
Rawlins, B. G., Wragg, J., Rheinhard, C., Atwood, R. C., Houston, A., Lark, R. M., and Rudolph, S.: Three dimensional soil organic matter distribution, accessibility and microbial respiration in macro-aggregates using osmium staining and synchrotron X-ray CT, SOIL Discuss., https://doi.org/10.5194/soil-2016-32, in review, 2016.
Schindelin, J., Arganda-Carreras, I., Frise, E., Kaynig, V., Longair, M., Pietzsch, T., Preibisch, S., Rueden, C., Saalfeld, S., Schmid, B., Tinevez, J. Y., White, D. J., Hartenstein, V., Eliceiri, K., Tomancak, P., and Cardona, A.: Fiji: an open-source platform for biological-image analysis, Nat. Methods, 9, 676–682, 2012.
Sebag, D., Disnar, J. R., Guillet, B., Di Giovanni, C., Verrecchia, E. P., and Durand, A.: Monitoring organic matter dynamics in soil profiles by “Rock-Eval pyrolysis”: bulk characterization and quantification of degradation, Eur. J. Soil Sci., 57, 344–355, https://doi.org/10.1111/j.1365-2389.2005.00745.x, 2006.
Tisdall, J. M. and Oades, J. M.: Organic matter and water-stable aggregates in soils, J. Soil Sci., 33, 141–163, https://doi.org/10.1111/j.1365-2389.1982.tb01755.x, 1982.
Webster, R. and Oliver, M. A.: Geostatistics for Environmental Scientists, Second Edition, John Wiley and Sons, Ltd, Chichester, 330 pp., 2007.
World Reference Base 2006: World Reference Base for Soil Resources 2006, World Soil Resources Reports No. 103, FAO Rome, Rome, 145 pp., 2007.
Yu, X., Wu, C., Fu, Y., Brookes, P. C., and Lu, S.: Three-dimensional pore structure and carbon distribution of macroaggregates in biochar-amended soil, Eur. J. Soil Sci., 67, 109–120, https://doi.org/10.1111/ejss.12305, 2016.
Short summary
We do not understand processes by which soil bacteria and fungi feed on soil organic matter (SOM). Previous research suggests the location of SOM in aggregates may influence whether bacteria can feed on it more easily. We did an experiment to identify the distribution of SOM on very small scales within nine soil aggregates. There was no clear evidence that the distribution of organic matter influenced how easily the organic matter was fed upon by bacteria.
We do not understand processes by which soil bacteria and fungi feed on soil organic matter...
