Articles | Volume 6, issue 1
https://doi.org/10.5194/soil-6-53-2020
© Author(s) 2020. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/soil-6-53-2020
© Author(s) 2020. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Variations in soil chemical and physical properties explain basin-wide Amazon forest soil carbon concentrations
Carlos Alberto Quesada
CORRESPONDING AUTHOR
Instituto Nacional de Pesquisas da Amazônia, Manaus, Cx. Postal
2223 – CEP 69080-971, Brazil
Claudia Paz
Instituto Nacional de Pesquisas da Amazônia, Manaus, Cx. Postal
2223 – CEP 69080-971, Brazil
Universidade Estadual Paulista, Departamento de Ecologia, CEP
15506-900, Rio Claro, São Paulo, Brazil
Erick Oblitas Mendoza
Instituto Nacional de Pesquisas da Amazônia, Manaus, Cx. Postal
2223 – CEP 69080-971, Brazil
Oliver Lawrence Phillips
School of Geography, University of Leeds, LS2 9JT, UK
Gustavo Saiz
Department of Life Sciences, Imperial College London, Silwood Park
Campus, Buckhurst Road, Ascot, Berkshire SL5 7PY, UK
Department of Environmental Chemistry, Faculty of Sciences,
Universidad Católica de la Santísima Concepción,
Concepción, Chile
Jon Lloyd
Department of Life Sciences, Imperial College London, Silwood Park
Campus, Buckhurst Road, Ascot, Berkshire SL5 7PY, UK
School of Tropical and Marine Sciences and Centre for Terrestrial
Environmental and Sustainability Sciences, James Cook University, Cairns,
4870, Queensland, Australia
Universidade de São Paulo, Faculdade de Filosofia Ciências e
Letras de Ribeirão Preto, Av Bandeirantes, 3900, CEP 14040-901, Bairro
Monte Alegre , Ribeirão Preto, São Paulo, Brazil
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Geosci. Model Dev., 15, 5241–5269, https://doi.org/10.5194/gmd-15-5241-2022, https://doi.org/10.5194/gmd-15-5241-2022, 2022
Short summary
Short summary
In tropical ecosystems, the availability of rock-derived elements such as P can be very low. Thus, without a representation of P cycling, tropical forest responses to rising atmospheric CO2 conditions in areas such as Amazonia remain highly uncertain. We introduced P dynamics and its interactions with the N and P cycles into the JULES model. Our results highlight the potential for high P limitation and therefore lower CO2 fertilization capacity in the Amazon forest with low-fertility soils.
Rahayu Adzhar, Douglas I. Kelley, Ning Dong, Charles George, Mireia Torello Raventos, Elmar Veenendaal, Ted R. Feldpausch, Oliver L. Phillips, Simon L. Lewis, Bonaventure Sonké, Herman Taedoumg, Beatriz Schwantes Marimon, Tomas Domingues, Luzmila Arroyo, Gloria Djagbletey, Gustavo Saiz, and France Gerard
Biogeosciences, 19, 1377–1394, https://doi.org/10.5194/bg-19-1377-2022, https://doi.org/10.5194/bg-19-1377-2022, 2022
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The MODIS Vegetation Continuous Fields (VCF) product underestimates tree cover compared to field data and could be underestimating tree cover significantly across the tropics. VCF is used to represent land cover or validate model performance in many land surface and global vegetation models and to train finer-scaled Earth observation products. Because underestimation in VCF may render it unsuitable for training data and bias model predictions, it should be calibrated before use in the tropics.
Cited articles
Baldock, J. A. and Skjemstad, J. O.: Role of the soil matrix and minerals in
protecting natural organic materials against biological attack, Org.
Geochem., 31, 697–710, 2000.
Bartko, J. J. and Pettigrew, K. D.: The Teacher's Corner: A Note on the
Correlation of Parts with Wholes, Am. Stat., 22, p. 41,
1968.
Bartoń, K.: MuMIn: Multi-model inference, R package version 1.9. 13, The
Comprehensive R Archive Network (CRAN), Vienna, Austria, 1–76, 2013.
Basile-Doelsch, I., Amundson, R., Stone, W. E. E., Masiello, C. A., Bottero,
J. Y., Colin, F., Masin, F., Borschneck, D., and Meunier, J. D.:
Mineralogical control of organic carbon dynamics in a volcanic ash soil on
La Réunion, Eur. J. Soil Sci., 56, 689–703, 2005.
Batjes, N. H.: Total carbon and nitrogen in the soils of the world, Eur.
J. Soil Sci., 47, 151–163, 1996.
Batjes, N. H. and Dijkshoorn, J. A.: Carbon and nitrogen stocks in the soils
of the Amazon Region, Geoderma, 89, 273–286, 1999.
Bird, M. I., Veenendaal, E. M., and Lloyd, J. J.: Soil carbon inventories and
δ13C along a moisture gradient in Botswana, Glob. Change
Biol., 10, 342–349, https://doi.org/10.1046/j.1365-2486.2003.00695.x, 2004.
Bish, D. L. and Reynolds, R. C.: Sample preparation for X-ray diffraction,
Rev. Mineral. Geochem., 20, 73–99, 1989.
Boudot, J. P., Hadj, A. B., Steiman, R., and Seigle-Murandi, F.:
Biodegradation of synthetic organo-metallic complexes of iron and aluminium
with selected metal to carbon ratios, Soil Biol. Biochem., 21,
961–966, 1989.
Bradford, M. A., Davies, C. A., Frey, S. D., Maddox, T. R., Melillo, J. M.,
Mohan, J. E., Reynolds, J. F., Treseder, K. K., and Wallenstein, M. D.:
Thermal adaptation of soil microbial respiration to elevated temperature,
Ecol. Lett., 11, 1316–1327, 2008.
Bruun, T. B., Elberling, B., and Christensen, B. T.: Lability of soil organic
carbon in tropical soils with different clay minerals, Soil Biol.
Biochem., 42, 888–895, 2010.
Buol, S. W., Southard, R. J., Graham, R. C., and McDaniel, P. A.: Soil
genesis and classification, John Wiley & Sons, 543 pp., 2011.
Burke, I. C., Yonker, C. M., Parton, W. J., Cole, C. V., Schimel, D. S., and
Flach, K.: Texture, climate, and cultivation effects on soil organic matter
content in US grassland soils, Soil Sci. Soc. Am. J.,
53, 800–805, 1989.
Chauvel, A., Lucas, Y., and Boulet, R.: On the genesis of the soil mantle of
the region of Manaus, Central Amazonia, Brazil, Cell. Mol. Life
Sci., 43, 234–241, https://doi.org/10.1007/bf01945546, 1987.
Chayes, F.: Ratio correlation: a manual for students of petrology and
geochemistry, University of Chicago Press, 99 pp., 1971.
Coley, P. D., Bryant, J. P., and Chapin, F. S. I.: Resource availability and
plant antiherbivore defense, Science, 230, 895–899,
https://doi.org/10.1126/science.230.4728.895, 1985.
Cornell, R. M. and Schwertmann, U.: The iron oxides: structure, properties,
reactions, occurrences and uses, John Wiley & Sons, 137 pp., 2003.
Cotrufo, M. F., Wallenstein, M. D., Boot, C. M., Denef, K., and Paul, E.: The
M icrobial E fficiency-M atrix S tabilization (MEMS) framework integrates
plant litter decomposition with soil organic matter stabilization: do labile
plant inputs form stable soil organic matter?, Glob. Change Biol., 19,
988–995, 2013.
Delvaux, B., Herbillon, A. J., and Vielvoye, L.: Characterization of a
weathering sequence of soils derived from volcanic ash in Cameroon:
Taxonomic, mineralogical and agronomic implications, Geoderma, 45, 375–388,
https://doi.org/10.1016/0016-7061(89)90017-7, 1989.
de Mendiburu, F.: Statistical procedures for agricultural research. Package “Agricolae”, version 1.4-4, Comprehensive R Archive Network, Institute for Statistics and Mathematics, Vienna, Austria, available at: http://cran.r-project.org/web/packages/agricolae/agricolae.pdf (last access: 15 May 2019), 2013.
Denef, K., Plante, A. F., and Six, J.: Characterization of soil organic
matter, in: Soil carbon dynamics: An integrated methodology, Cambridge
University Press, 91–126, 2010.
Deng, Q., Hui, D., Zhang, D., Zhou, G., Liu, J., Liu, S., Chu, G., and Li,
J.: Effects of precipitation increase on soil respiration: a three-year
field experiment in subtropical forests in China, PLoS One, 7, e41493, https://doi.org/10.1371/journal.pone.0041493,
2012.
Dick, D. P., Gonçalves, C. N., Dalmolin, R. S., Knicker, H., Klamt, E.,
Kögel-Knabner, I., Simões, M. L., and Martin-Neto, L.:
Characteristics of soil organic matter of different Brazilian Ferralsols
under native vegetation as a function of soil depth, Geoderma, 124,
319–333, 2005.
Do Nascimento, N. R., Bueno, G. T., Fritsch, E., Herbillon, A. J., Allard,
T., Melfi, A. J., Astolfo, R., Boucher, H., and Li, Y.: Podzolization as a
deferralitization process: a study of an Acrisol–Podzol sequence derived
from Palaeozoic sandstones in the northern upper Amazon Basin, Eur.
J. Soil Sci., 55, 523–538, 2004.
Driessen, P., Deckers, J., Spaargaren, O., and Nachtergaele, F.: Lecture
notes on the major soils of the world, Food and Agriculture Organization
(FAO), 334 pp., 2000.
Eusterhues, K., Rumpel, C., and Kögel-Knabner, I.: Stabilization of soil
organic matter isolated via oxidative degradation, Org. Geochem.,
36, 1567–1575, 2005.
Feller, C. and Beare, M. H.: Physical control of soil organic matter
dynamics in the tropics, Geoderma, 79, 69–116, 1997.
Fine, P. V., Mesones, I., and Coley, P. D.: Herbivores promote habitat
specialization by trees in Amazonian forests, Science, 305, 663–665,
2004.
Fittkau, E. J.: Esboco de uma divisao ecologica da regiao Amazonica, edited
by: Idrobo, I. M., 363–372, 1971.
Gee, G. W. and Bauder, J. W.: Particle-size analysis, in: Methods in Soil
Analysis, Part 1, Physical and Mineralogical Methods, edited by: Klute, A.,
American Society of Agronomy and Soil Science Society of
America, Madison, Wisconsin, USA, 383–409, 1986.
Giraudoux, P.: pgirmess: data analysis in ecology, R package version 1.5. 8,
R Foundation for Statistical Computing Vienna, Austria, 64 pp., 2013.
Glinski, J. and Lipiec, J.: Soil physical conditions and plant roots. CRC press. Boca Raton, FL, 250 pp., 1990.
Hartemink, A. E. and Huting, J.: Land cover, extent, and properties of
Arenosols in Southern Africa, Arid Land Res. Manag., 22,
134–147, 2008.
Herrera, R., Jordan, C. F., Klinge, H., and Medina, E.: Amazon ecosystems:
Their structure and functioning with particular emphasis on nutrients,
Interciencia, 3, 223–232, 1978.
Hoorn, C. and Wesselingh, F.: Amazonia: landscape and species evolution: a
look into the past, John Wiley & Sons, 447 pp., 2011.
Hoorn, C., Wesselingh, F. P., Ter Steege, H., Bermudez, M. A., Mora, A.,
Sevink, J., Sanmartín, I., Sanchez-Meseguer, A., Anderson, C. L., and
Figueiredo, J. P.: Amazonia through time: Andean uplift, climate change,
landscape evolution, and biodiversity, Science, 330, 927–931, 2010.
Irion, G.: Soil infertility in the Amazonian rain forest,
Naturwissenschaften, 65, 515–519, https://doi.org/10.1007/BF00439791, 1978.
IUSS: (International Union of Soil Science) Working Group WRB: 70 World Reference Base for Soil Resources 2014, International Soil Classification System For Naming Soils And Creating Legends For Soil Maps, Rome, 2014.
Jahn, R., Blume, H.-P., Asio, V. B., Spaargaren, O., and Schad, P.:
Guidelines for soil description, FAO, Rome, 97 pp., 2006.
Kahle, M., Kleber, M., Torn, M. S., and Jahn, R.: Carbon storage in coarse
and fine clay fractions of illitic soils, Soil Sci. Soc. Am.
J., 67, 1732–1739, 2003.
Kahle, M., Kleber, M., and Jahn, R.: Retention of dissolved organic matter by
phyllosilicate and soil clay fractions in relation to mineral properties,
Org. Geochem., 35, 269–276, 2004.
Kaiser, K. and Guggenberger, G.: Mineral surfaces and soil organic matter,
Eur. J. Soil Sci., 54, 219–236,
https://doi.org/10.1046/j.1365-2389.2003.00544.x, 2003.
Kaiser, K. and Zech, W.: Sorption of dissolved organic nitrogen by acid
subsoil horizons and individual mineral phases, Eur. J. Soil
Sci., 51, 403–411, 2000.
Kaiser, K., Mikutta, R., and Guggenberger, G.: Increased stability of organic
matter sorbed to ferrihydrite and goethite on aging, Soil Sci. Soc.
Am. J., 71, 711–719, 2007.
Kalbitz, K. and Kaiser, K.: Contribution of dissolved organic matter to
carbon storage in forest mineral soils, J. Plant Nutr. Soil
Sci., 171, 52–60, 2008.
Kitagawa, Y.: Goethite and hematite in some solls from the amazon region,
Soil Sci. Plant Nutr., 29, 209–217, 1983.
Kleber, M., Mikutta, R., Torn, M. S., and Jahn, R.: Poorly crystalline
mineral phases protect organic matter in acid subsoil horizons, Eur.
J. Soil Sci., 56, 717–725, 2005.
Kleber, M., Eusterhues, K., Keiluweit, M., Mikutta, C., Mikutta, R., and
Nico, P. S.: Mineral–organic associations: formation, properties, and
relevance in soil environments, in Advances in agronomy,
Elsevier, 130, 1–140, 2015.
Lloyd, J. and Farquhar, G. D.: Effects of rising temperatures and [CO2] on
the physiology of tropical forest trees, Philos. T.
R. Soc. B, 363, 1811–1817, https://doi.org/10.1098/rstb.2007.0032, 2008.
Lloyd, J., Bloomfield, K., Domingues, T. F., and Farquhar, G. D.:
Photosynthetically relevant foliar traits correlating better on a mass vs. an
area basis: of ecophysiological relevance or just a case of mathematical
imperatives and statistical quicksand?, New Phytol., 199, 311–321,
2013.
Luizão, F. J. and Schubart, H. O. R.: Litter production and
decomposition in a terra-firme forest of Central Amazonia, Experientia,
43, 259–265, 1987.
Lynch, J. M. and Bragg, E.: Microorganisms and soil aggregate stability, in:
Advances in soil science, Springer, 133–171, 1985.
Marques, J. J., Teixeira, W. G., Schulze, D. G., and Curi, N.: Mineralogy of
soils with unusually high exchangeable Al from the western Amazon Region,
Clay Miner., 37, 651–661, 2002.
Mikutta, R., Kleber, M., and Jahn, R.: Poorly crystalline minerals protect
organic carbon in clay subfractions from acid subsoil horizons, Geoderma,
128, 106–115, 2005.
Mikutta, R., Mikutta, C., Kalbitz, K., Scheel, T., Kaiser, K., and Jahn, R.:
Biodegradation of forest floor organic matter bound to minerals via
different binding mechanisms, Geochim. Cosmochim. Ac., 71,
2569–2590, 2007.
Nelson, D. W. and Sommers, L. E.: Total carbon and total nitrogen, in:
Methods of Soil Analysis: Part 3 – Chemical Methods, edited by: Sparks, D. L.,
American Society of Agronomy/Soil Science Society of America,
Madison, WI, 961–1010, 1996.
Nierop, K. G., Jansen, B., and Verstraten, J. M.: Dissolved organic matter,
aluminium and iron interactions: precipitation induced by metal/carbon
ratio, pH and competition, Sci. Total Environ., 300,
201–211, 2002.
Oades, J. M.: The role of biology in the formation, stabilization and
degradation of soil structure, in: Soil Structure/Soil Biota
Interrelationships, Elsevier, 377–400, 1993.
Oades, J. M.: An Introduction to Organic Matter in Mineral Soils, in: Minerals in Soil Environments, edited by: Dixon, J. B. and Weed, S. B., 89–159, https://doi.org/10.2136/sssabookser1.2ed.c3, 2018.
Parfitt, R. L. and Childs, C. W.: Estimation of forms of Fe and Al-a review,
and analysis of contrasting soils by dissolution and Mossbauer methods, Soil
Res., 26, 121–144, 1988.
Parfitt, R. L., Theng, B. K. G., Whitton, J. S., and Shepherd, T. G.: Effects
of clay minerals and land use on organic matter pools, Geoderma, 75,
1–12, 1997.
Paul, S., Flessa, H., Veldkamp, E., and López-Ulloa, M.: Stabilization of
recent soil carbon in the humid tropics following land use changes: evidence
from aggregate fractionation and stable isotope analyses, Biogeochemistry,
87, 247–263, 2008.
Paz, C. P.: Distribuição das frações do carbono orgânico
nos solos de florestas maduras na bacia Amazônica: o papel das
propriedades do solo, da qualidade da liteira e do clima, MSc thesis, Instituto Nacional de Pesquisas da Amazô̂nia, Brazil, 62 pp., 2011.
Pella, E.: Elemental organic analysis, Part 2, State of the art, Am.
Lab., 22, 28–32, 1990.
Percival, H. J., Parfitt, R. L., and Scott, N. A.: Factors controlling soil
carbon levels in New Zealand grasslands is clay content important?, Soil
Sci. Soc. Am. J., 64, 1623–1630, 2000.
Pleysier, J. L. and Juo, A. S. R.: A single-extraction method using
silver-thiourea for measuring exchangeable cations and effective CEC in
soils with variable charges, Soil Sci., 129, 205–211, 1980.
Quesada, C. A. and Lloyd, J.: Soil–Vegetation Interactions in Amazonia, in:
Interactions Between Biosphere, Atmosphere and Human Land Use in the Amazon
Basin, edited by: Nagy, L., Forsberg, B. R., and Artaxo, P.,
Springer Berlin Heidelberg, Berlin, Heidelberg, 267–299, 2016.
Quesada, C. A., Lloyd, J., Schwarz, M., Patiño, S., Baker, T. R.,
Czimczik, C., Fyllas, N. M., Martinelli, L., Nardoto, G. B., Schmerler, J.,
Santos, A. J. B., Hodnett, M. G., Herrera, R., Luizão, F. J., Arneth,
A., Lloyd, G., Dezzeo, N., Hilke, I., Kuhlmann, I., Raessler, M., Brand, W.
A., Geilmann, H., Moraes Filho, J. O., Carvalho, F. P., Araujo Filho, R. N.,
Chaves, J. E., Cruz Junior, O. F., Pimentel, T. P., and Paiva, R.: Variations
in chemical and physical properties of Amazon forest soils in relation to
their genesis, Biogeosciences, 7, 1515–1541, https://doi.org/10.5194/bg-7-1515-2010, 2010.
Quesada, C. A., Lloyd, J., Anderson, L. O., Fyllas, N. M., Schwarz, M., and
Czimczik, C. I.: Soils of Amazonia with particular reference to the RAINFOR
sites, Biogeosciences, 8, 1415–1440, https://doi.org/10.5194/bg-8-1415-2011,
2011.
Quesada, C. A., Phillips, O. L., Schwarz, M., Czimczik, C. I., Baker, T. R.,
Patiño, S., Fyllas, N. M., Hodnett, M. G., Herrera, R., Almeida, S.,
Alvarez Dávila, E., Arneth, A., Arroyo, L., Chao, K. J., Dezzeo, N.,
Erwin, T., di Fiore, A., Higuchi, N., Honorio Coronado, E., Jimenez, E. M.,
Killeen, T. J., Lezama, A. T., Lloyd, G., López-González, G.,
Luizão, F. J., Malhi, Y., Monteagudo, A., Neill, D. A., Núñez
Vargas, P., Paiva, R., Peacock, J., Peñuela, M. C., Peña Cruz, A.,
Pitman, N., Priante Filho, N., Prieto, A., Ramírez, H., Rudas, A.,
Salomão, R., Santos, A. J. B., Schmerler, J., Silva, N., Silveira, M.,
Vásquez, R., Vieira, I., Terborgh, J., and Lloyd, J.: Basin-wide
variations in Amazon forest structure and function are mediated by both
soils and climate, Biogeosciences, 9, 2203–2246,
https://doi.org/10.5194/bg-9-2203-2012, 2012.
Quesada, C. A. N.: Soil vegetation interactions across Amazonia, University
of Leeds (School of Geography), 236 pp., 2008.
R Development Core Team: R: A Language and Environment for Statistical
Computing, edited by: Austria, R., Foundation for Statistical Computing Vienna
Austria, 0(01/19), ISBN 3-900051-07-0, 2012.
Richter, D. D. and Babbar, L. I.: Soil diversity in the tropics, Elsevier, Adv.
Ecol. Res., 21, 315–389, 1991.
Saggar, S., Parshotam, A., Sparling, G. P., Feltham, C. W., and Hart, P. B.
S.: 14C-labelled ryegrass turnover and residence times in soils varying in
clay content and mineralogy, Soil Biol. Biochem., 28,
1677–1686, 1996.
Saggar, S., Parshotam, A., Hedley, C., and Salt, G.: 14C-labelled glucose
turnover in New Zealand soils, Soil Biol. Biochem., 31,
2025–2037, 1999.
Saidy, A. R., Smernik, R. J., Baldock, J. A., Kaiser, K., Sanderman, J., and
Macdonald, L. M.: Effects of clay mineralogy and hydrous iron oxides on
labile organic carbon stabilisation, Geoderma, 173, 104–110, 2012.
Saiz, G., Bird, M. I., Domingues, T. F., Schrodt, F., Schwarz, M.,
Feldpausch, T. R., Veenendaal, E. M., Djagbletey, G., Hien, F., Compaore,
H., Diallo, A., and Lloyd, J.: Variation in soil carbon stocks and their
determinants across a precipitation gradient in West Africa, Glob. Change
Biol., 18, 1670–1683, https://doi.org/10.1111/j.1365-2486.2012.02657.x, 2012.
Saiz, G., Bird, M., Wurster, C., Quesada, C. A., Ascough, P., Domingues, T.,
Schrodt, F., Schwarz, M., Feldpausch, T. R., Veenendaal, E., Djagbletey, G.,
Jacobsen, G., Hien, F., Compaore, H., Diallo, A., and Lloyd, J.: The
influence of C3 and C4 vegetation on soil organic matter dynamics in
contrasting semi-natural tropical ecosystems, Biogeosciences, 12,
5041–5059, https://doi.org/10.5194/bg-12-5041-2015, 2015.
Sanchez, P. A.: Properties and Management of Soils in the Tropics, Wiley,
New York, 618 pp., 1976.
Scheel, T., Dörfler, C., and Kalbitz, K.: Precipitation of dissolved
organic matter by aluminum stabilizes carbon in acidic forest soils, Soil
Sci. Soc. Am. J., 71, 64–74, 2007.
Scheel, T., Haumaier, L., Ellerbrock, R. H., Rühlmann, J., and Kalbitz,
K.: Properties of organic matter precipitated from acidic forest soil
solutions, Org. Geochem., 39, 1439–1453, 2008.
Schrumpf, M., Kaiser, K., Guggenberger, G., Persson, T., Kögel-Knabner, I., and Schulze, E.-D.: Storage and stability of organic carbon in soils as related to depth, occlusion within aggregates, and attachment to minerals, Biogeosciences, 10, 1675–1691, https://doi.org/10.5194/bg-10-1675-2013, 2013.
Schwertmann, U., Wagner, F., and Knicker, H.: Ferrihydrite–humic
associations, Soil Sci. Soc. Am. J., 69, 1009–1015,
2005.
Siegel, S. and Castellan Jr., N.: Nonparametric statistics for the
behavioural sciences, 2nd Edn., McGraw-Hill, Boston, 399 pp., 1998.
Sioli, H.: The Amazon and its main affluents: hydrography, morphology of the
river courses, and river types, in: The Amazon, Springer,
127–165, 1984.
Six, J., Bossuyt, H., Degryze, S., and Denef, K.: A history of research on
the link between (micro) aggregates, soil biota, and soil organic matter
dynamics, Soil Till. Res., 79, 7–31, 2004.
Sollins, P., Homann, P., and Caldwell, B. A.: Stabilization and
destabilization of soil organic matter: mechanisms and controls, Geoderma,
74, 65–105, 1996.
Sombroek, W. G.: A Reconnaissance of the Soils of the Brazilian Amazon
Region, Centre for Agricultural Publications and Documentation, Wageningen, 292 pp.,
1966.
Sombroek, W. G.: Soils of the Amazon region, in The Amazon,
Springer, 521–535, 1984.
Sombroek, W. G.: Amazon landforms and soils in relation to biological
diversity, Acta Amazon., 30, 81–100, 2000.
Telles, E. de C. C., de Camargo, P. B., Martinelli, L. A., Trumbore, S. E.,
da Costa, E. S., Santos, J., Higuchi, N., and Oliveira Jr., R. C.: Influence
of soil texture on carbon dynamics and storage potential in tropical forest
soils of Amazonia, Global Biogeochem. Cy., 17, 1–12, 2003.
Tiessen, H. and Moir, J. O.: Total and Organic Carbon, in: Soil Sampling and
Methods of Analysis, edited by: Carter, M. R., 187–199, Lewis Publishers,
Boca Raton, FL, 1993.
Tisdall, J. M. and Oades, J.: Organic matter and water-stable aggregates in
soils, J. Soil Sci., 33, 141–163, 1982.
Trumbore, S. and Barbosa De Camargo, P.: Soil carbon dynamics, Amazonia and
Global Change, 186, 451–462, 2009.
Trumbore, S. E. and Zheng, S.: Comparison of fractionation methods for soil
organic matter 14C analysis, Radiocarbon, 38, 219–229, 1996.
van den Boogaart, K. G. and Tolosana-Delgado, R.: “Compositions”: a
unified R package to analyze compositional data, Comput. Geosci.,
34, 320–338, 2008.
van Lützow, M., Kögel-Knabner, I., Ekschmitt, K., Matzner, E.,
Guggenberger, G., Marschner, B., and Flessa, H.: Stabilization of organic
matter in temperate soils: mechanisms and their relevance under different
soil conditions – a review, Eur. J. Soil Sci., 57,
426–445, 2006.
Van Reeuwijk, L. P.: Procedures for soil analysis, 6th Edn., International
Soil Reference Information Centre, ISRIC, Wageningen, The Netherlands,
2002.
Van Soest, P. J.: Use of detergents in the analysis of fibrous feeds, 2. A
rapid method for the determination of fiber and lignin, J.
Assoc. Off. Agr. Chem., 46, 829–835, 1963.
Van Veen, J. A. and Kuikman, P. J.: Soil structural aspects of decomposition
of organic matter by micro-organisms, Biogeochemistry, 11, 213–233,
1990.
Wagai, R. and Mayer, L. M.: Sorptive stabilization of organic matter in
soils by hydrous iron oxides, Geochim. Cosmochim. Ac., 71,
25–35, 2007.
West, L. T., Beinroth, F. H., Sumner, M. E., and Kang, B. T.: Ultisols:
Characteristics and impacts on society, in: Advances in Agronomy, Vol. 63,
Elsevier, 179–236, 1997.
Wiseman, C. L. S. and Püttmann, W.: Interactions between mineral phases
in the preservation of soil organic matter, Geoderma, 134, 109–118,
2006.
Wurster, C. M., Saiz, G., Calder, A., and Bird, M. I.: Recovery of organic
matter from mineral-rich sediment and soils for stable isotope analyses
using static dense media, Rapid Commun. Mass Sp., 24,
165–168, 2010.
Zimmermann, M., Leifeld, J., Schmidt, M. W. I., Smith, P., and Fuhrer, J.:
Measured soil organic matter fractions can be related to pools in the RothC
model, Eur. J. Soil Sci., 58, 658–667, 2007.
Short summary
Amazon soils hold as much carbon (C) as is contained in the vegetation. In this work we sampled soils across 8 different Amazonian countries to try to understand which soil properties control current Amazonian soil C concentrations. We confirm previous knowledge that highly developed soils hold C through clay content interactions but also show a previously unreported mechanism of soil C stabilization in the younger Amazonian soil types which hold C through aluminium organic matter interactions.
Amazon soils hold as much carbon (C) as is contained in the vegetation. In this work we sampled...