Articles | Volume 10, issue 1
https://doi.org/10.5194/soil-10-251-2024
© Author(s) 2024. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/soil-10-251-2024
© Author(s) 2024. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Unraveling biogeographical patterns and environmental drivers of soil fungal diversity at the French national scale
Christophe Djemiel
Agroécologie, INRAE, Institut Agro, Univ. Bourgogne Franche-Comté, 21000 Dijon, France
Samuel Dequiedt
Agroécologie, INRAE, Institut Agro, Univ. Bourgogne Franche-Comté, 21000 Dijon, France
Walid Horrigue
Agroécologie, INRAE, Institut Agro, Univ. Bourgogne Franche-Comté, 21000 Dijon, France
Arthur Bailly
Agroécologie, INRAE, Institut Agro, Univ. Bourgogne Franche-Comté, 21000 Dijon, France
Mélanie Lelièvre
Agroécologie, INRAE, Institut Agro, Univ. Bourgogne Franche-Comté, 21000 Dijon, France
Julie Tripied
Agroécologie, INRAE, Institut Agro, Univ. Bourgogne Franche-Comté, 21000 Dijon, France
Charles Guilland
Agroécologie, INRAE, Institut Agro, Univ. Bourgogne Franche-Comté, 21000 Dijon, France
present address: Novasol experts, 21000 Dijon, France
Solène Perrin
Agroécologie, INRAE, Institut Agro, Univ. Bourgogne Franche-Comté, 21000 Dijon, France
Gwendoline Comment
Agroécologie, INRAE, Institut Agro, Univ. Bourgogne Franche-Comté, 21000 Dijon, France
Nicolas P. A. Saby
INRAE, Info&Sols, 45075 Orléans, France
Claudy Jolivet
INRAE, Info&Sols, 45075 Orléans, France
Antonio Bispo
INRAE, Info&Sols, 45075 Orléans, France
Line Boulonne
INRAE, Info&Sols, 45075 Orléans, France
Antoine Pierart
ADEME, Service Agriculture et Forêt, 49004 Angers, France
Patrick Wincker
Génomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, 91057 Evry, France
Corinne Cruaud
Génomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, 91057 Evry, France
Pierre-Alain Maron
Agroécologie, INRAE, Institut Agro, Univ. Bourgogne Franche-Comté, 21000 Dijon, France
Sébastien Terrat
Agroécologie, INRAE, Institut Agro, Univ. Bourgogne Franche-Comté, 21000 Dijon, France
Lionel Ranjard
CORRESPONDING AUTHOR
Agroécologie, INRAE, Institut Agro, Univ. Bourgogne Franche-Comté, 21000 Dijon, France
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This paper compares the soil organic carbon fractions obtained from a new thermal fractionation scheme and a well-known physical fractionation scheme on an unprecedented dataset of French topsoil samples. For each fraction, we use a machine learning model to determine its environmental drivers (pedology, climate, and land cover). Our results suggest that these two fractionation schemes provide different fractions, which means they provide complementary information.
Amicie A. Delahaie, Pierre Barré, François Baudin, Dominique Arrouays, Antonio Bispo, Line Boulonne, Claire Chenu, Claudy Jolivet, Manuel P. Martin, Céline Ratié, Nicolas P. A. Saby, Florence Savignac, and Lauric Cécillon
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SOIL, 9, 21–38, https://doi.org/10.5194/soil-9-21-2023, https://doi.org/10.5194/soil-9-21-2023, 2023
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We introduce Shapley values for machine learning model interpretation and reveal the local and global controlling factors of soil organic carbon (SOC) stocks. The method enables spatial analysis of the important variables. Vegetation and topography determine much of the SOC stock variation in mainland France. We conclude that SOC stock variation is complex and should be interpreted at multiple levels.
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Pollution of French soils by polycyclic aromatic hydrocarbons (PAHs), known as carcinogenic pollutants, was quantified in this work using an extended data set of 2154 soils sampled across France. The map of PAH concentrations in French soils revealed strong trends in regions with heavy industries and around cities. The PAH signatures indicated the influence of PAH emissions in Europe during the industrial revolution. Health risks posed by PAHs in soils were low but need to be considered.
Virginie Moreaux, Simon Martel, Alexandre Bosc, Delphine Picart, David Achat, Christophe Moisy, Raphael Aussenac, Christophe Chipeaux, Jean-Marc Bonnefond, Soisick Figuères, Pierre Trichet, Rémi Vezy, Vincent Badeau, Bernard Longdoz, André Granier, Olivier Roupsard, Manuel Nicolas, Kim Pilegaard, Giorgio Matteucci, Claudy Jolivet, Andrew T. Black, Olivier Picard, and Denis Loustau
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The model GO+ describes the functioning of managed forests based upon biophysical and biogeochemical processes. It accounts for the impacts of forest operations on energy, water and carbon exchanges within the soil–vegetation–atmosphere continuum. It includes versatile descriptions of management operations. Its sensitivity and uncertainty are detailed and predictions are compared with observations about mass and energy exchanges, hydrological data, and tree growth variables from different sites.
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Executive editor
This is one of the first surveys of soil fungal diversity across land uses at the national scale.
Short summary
The fungal kingdom has been diversifying for more than 800 million years by colonizing a large number of habitats on Earth. Based on a unique dataset (18S rDNA meta-barcoding), we described the spatial distribution of fungal diversity at the scale of France and the environmental drivers by tackling biogeographical patterns. We also explored the fungal network interactions across land uses and climate types.
The fungal kingdom has been diversifying for more than 800 million years by colonizing a large...