Articles | Volume 8, issue 1
https://doi.org/10.5194/soil-8-297-2022
© Author(s) 2022. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/soil-8-297-2022
© Author(s) 2022. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Original research article
| 
08 Apr 2022
Original research article |
| 08 Apr 2022
| 08 Apr 2022
Lower functional redundancy in “narrow” than “broad” functions in global soil metagenomics
State Key Laboratory of Biocontrol, School of Ecology, Sun Yat-sen
University, Shenzhen, 518107, China
Kayan Ma
State Key Laboratory of Biocontrol, School of Ecology, Sun Yat-sen
University, Shenzhen, 518107, China
Yu Huang
State Key Laboratory of Biocontrol, School of Ecology, Sun Yat-sen
University, Shenzhen, 518107, China
Qi Fu
State Key Laboratory of Biocontrol, School of Ecology, Sun Yat-sen
University, Shenzhen, 518107, China
Yingbo Qiu
State Key Laboratory of Biocontrol, School of Ecology, Sun Yat-sen
University, Shenzhen, 518107, China
Jiajiang Lin
CORRESPONDING AUTHOR
Fujian Key Laboratory of Pollution Control and Resource Reuse, College
of Environmental Science and Engineering, Fujian Normal University, Fuzhou,
350007, China
Christopher W. Schadt
Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN
37831, USA
Department of Microbiology, University of Tennessee, Knoxville, TN
37996, USA
Hao Chen
State Key Laboratory of Biocontrol, School of Ecology, Sun Yat-sen
University, Shenzhen, 518107, China
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Cited
14 citations as recorded by crossref.
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- Soil development following glacier retreat shapes metagenomic and metabolomic functioning associated with asynchronous C and N accumulation Y. Huang et al. 10.1016/j.scitotenv.2023.164405
- Metagenomic insights into the functional genes across transects in a typical estuarine marsh J. Yangyao et al. 10.1016/j.scitotenv.2022.159593
- Evaluating the influence of hydraulic loading rate on functional genes associated with nutrient cycling in constructed wetlands H. Sheng et al. 10.1016/j.jwpe.2024.104998
- Long-term mercury contamination does not affect the microbial gene potential for C and N cycling in soils but enhances detoxification gene abundance B. Frey et al. 10.3389/fmicb.2022.1034138
- Priestia aryabhattai Improves Soil Environment and Promotes Alfalfa Growth by Enhancing Rhizosphere Microbial Carbon Sequestration Capacity Under Greenhouse Conditions F. Wang et al. 10.1007/s00284-024-03946-9
- Bacterial diversity and network modularity determine alfalfa yield in flood lands T. Tarchen et al. 10.1016/j.apsoil.2023.105101
- Effects of swine manure dilution with lagoon effluent on microbial communities and odor formation in pit recharge systems O. Hwang et al. 10.1016/j.jenvman.2024.120884
- Metagenome Analysis of Forest Fire Soil to Understand the Impact of Fire on the Diversity of Microorganisms S. Bhatt et al. 10.1080/01490451.2025.2460516
- The reciprocal changes in dominant species with complete metabolic functions explain the decoupling phenomenon of microbial taxonomic and functional composition in a grassland H. Liu et al. 10.3389/fmicb.2023.1113157
- Monotonic trends of soil microbiomes, metagenomic and metabolomic functioning across ecosystems along water gradients in the Altai region, northwestern China Q. Fu et al. 10.1016/j.scitotenv.2023.169351
- Metagenomics unravel distinct taxonomic and functional diversities between terrestrial and aquatic biomes Q. Fu et al. 10.1016/j.isci.2024.111047
- Dual effects of plant growth-promoting rhizobacteria (PGPR) on the Moso bamboo-soil system: Plant growth promotion and microbial community stability N. Li et al. 10.1016/j.indcrop.2023.117151
- Anthropedogenesis in coal mine overburden; the need for a comprehensive, fundamental biogeochemical approach S. Gunathunga et al. 10.1016/j.scitotenv.2023.164515
14 citations as recorded by crossref.
- Exploring ecological effects of arsenic and cadmium combined exposure on cropland soil: from multilevel organisms to soil functioning by multi-omics coupled with high-throughput quantitative PCR X. Ren et al. 10.1016/j.jhazmat.2024.133567
- Soil development following glacier retreat shapes metagenomic and metabolomic functioning associated with asynchronous C and N accumulation Y. Huang et al. 10.1016/j.scitotenv.2023.164405
- Metagenomic insights into the functional genes across transects in a typical estuarine marsh J. Yangyao et al. 10.1016/j.scitotenv.2022.159593
- Evaluating the influence of hydraulic loading rate on functional genes associated with nutrient cycling in constructed wetlands H. Sheng et al. 10.1016/j.jwpe.2024.104998
- Long-term mercury contamination does not affect the microbial gene potential for C and N cycling in soils but enhances detoxification gene abundance B. Frey et al. 10.3389/fmicb.2022.1034138
- Priestia aryabhattai Improves Soil Environment and Promotes Alfalfa Growth by Enhancing Rhizosphere Microbial Carbon Sequestration Capacity Under Greenhouse Conditions F. Wang et al. 10.1007/s00284-024-03946-9
- Bacterial diversity and network modularity determine alfalfa yield in flood lands T. Tarchen et al. 10.1016/j.apsoil.2023.105101
- Effects of swine manure dilution with lagoon effluent on microbial communities and odor formation in pit recharge systems O. Hwang et al. 10.1016/j.jenvman.2024.120884
- Metagenome Analysis of Forest Fire Soil to Understand the Impact of Fire on the Diversity of Microorganisms S. Bhatt et al. 10.1080/01490451.2025.2460516
- The reciprocal changes in dominant species with complete metabolic functions explain the decoupling phenomenon of microbial taxonomic and functional composition in a grassland H. Liu et al. 10.3389/fmicb.2023.1113157
- Monotonic trends of soil microbiomes, metagenomic and metabolomic functioning across ecosystems along water gradients in the Altai region, northwestern China Q. Fu et al. 10.1016/j.scitotenv.2023.169351
- Metagenomics unravel distinct taxonomic and functional diversities between terrestrial and aquatic biomes Q. Fu et al. 10.1016/j.isci.2024.111047
- Dual effects of plant growth-promoting rhizobacteria (PGPR) on the Moso bamboo-soil system: Plant growth promotion and microbial community stability N. Li et al. 10.1016/j.indcrop.2023.117151
- Anthropedogenesis in coal mine overburden; the need for a comprehensive, fundamental biogeochemical approach S. Gunathunga et al. 10.1016/j.scitotenv.2023.164515
Latest update: 10 May 2025
Short summary
By analyzing and generalizing microbial taxonomic and functional profiles, we provide strong evidence that the degree of soil microbial functional redundancy differs significantly between “broad” and “narrow” functions across the globe. Future sequencing efforts will likely increase our confidence in comparative metagenomes and provide time-series information to further identify to what extent microbial functional redundancy regulates dynamic ecological fluxes across space and time.
By analyzing and generalizing microbial taxonomic and functional profiles, we provide strong...
