Articles | Volume 2, issue 2
https://doi.org/10.5194/soil-2-257-2016
© Author(s) 2016. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
https://doi.org/10.5194/soil-2-257-2016
© Author(s) 2016. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Review article
| 
20 Jun 2016
Review article |
| 20 Jun 2016
Technological advancements and their importance for nematode identification
Mohammed Ahmed
CORRESPONDING AUTHOR
Harper Adams University, Newport, TF10 8NB, Shropshire, UK
Melanie Sapp
Fera, Sand Hutton, YO41 1LZ, North Yorkshire, UK
Cluster of Excellence on Plant Sciences (CEPLAS), Heinrich Heine University, Population Genetics, 40225 Düsseldorf, Germany
Thomas Prior
Fera, Sand Hutton, YO41 1LZ, North Yorkshire, UK
Gerrit Karssen
National Plant Protection Organization Geertjesweg 15, 6706 EA, Wageningen, the Netherlands
Matthew Alan Back
Harper Adams University, Newport, TF10 8NB, Shropshire, UK
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Cited
14 citations as recorded by crossref.
- Taxonomy assignment approach determines the efficiency of identification of OTUs in marine nematodes O. Holovachov et al. 10.1098/rsos.170315
- Real-time PCR, a great tool for fast identification, sensitive detection and quantification of important plant-parasitic nematodes A. Braun-Kiewnick & S. Kiewnick 10.1007/s10658-018-1487-7
- Reduced tillage, but not organic matter input, increased nematode diversity and food web stability in European long‐term field experiments G. Bongiorno et al. 10.1111/mec.15270
- Nematode pests of some major cereals in Nigeria: Need for integration of morphological/morphometrical, biochemical, and molecular diagnostic approaches for accurate identification S. Abdulsalam et al. 10.1111/ppa.13412
- Development of a Species-Specific PCR for Detection and Quantification of Meloidogyne hapla in Soil Using the 16D10 Root-Knot Nematode Effector Gene A. Gorny et al. 10.1094/PDIS-09-18-1539-RE
- Decrypting species in the Nacobbus aberrans (Nematoda: Pratylenchidae) complex using integrative taxonomy P. Lax et al. 10.1111/zsc.12494
- Assessing the diversity of nematodes in the Store Mosse National Park (Sweden) using metabarcoding M. Ahmed et al. 10.3897/mbmg.8.111307
- Laimaphelenchus suberensis sp. nov. associated with Quercus suber in Portugal C. Maleita et al. 10.1007/s10658-017-1324-4
- Meloidogyne luci, a new root‐knot nematode parasitizing potato in Portugal C. Maleita et al. 10.1111/ppa.12755
- A new root-knot nematode, Meloidogyne vitis sp. nov. (Nematoda: Meloidogynidae), parasitizing grape in Yunnan Y. Yang et al. 10.1371/journal.pone.0245201
- The impact of high throughput sequencing on plant health diagnostics I. Adams et al. 10.1007/s10658-018-1570-0
- Comparison of morphological, DNA barcoding, and metabarcoding characterizations of freshwater nematode communities J. Schenk et al. 10.1002/ece3.6104
- Current advances in the identification of plant nematode diseases: From lab assays to in-field diagnostics H. Shao et al. 10.3389/fpls.2023.1106784
- Combining Traditional Taxonomy and Metabarcoding: Assemblage Structure of Nematodes in the Shelf Sediments of the Eastern Antarctic Peninsula G. Pantó et al. 10.3389/fmars.2021.629706
10 citations as recorded by crossref.
- Taxonomy assignment approach determines the efficiency of identification of OTUs in marine nematodes O. Holovachov et al. 10.1098/rsos.170315
- Real-time PCR, a great tool for fast identification, sensitive detection and quantification of important plant-parasitic nematodes A. Braun-Kiewnick & S. Kiewnick 10.1007/s10658-018-1487-7
- Reduced tillage, but not organic matter input, increased nematode diversity and food web stability in European long‐term field experiments G. Bongiorno et al. 10.1111/mec.15270
- Nematode pests of some major cereals in Nigeria: Need for integration of morphological/morphometrical, biochemical, and molecular diagnostic approaches for accurate identification S. Abdulsalam et al. 10.1111/ppa.13412
- Development of a Species-Specific PCR for Detection and Quantification of Meloidogyne hapla in Soil Using the 16D10 Root-Knot Nematode Effector Gene A. Gorny et al. 10.1094/PDIS-09-18-1539-RE
- Decrypting species in the Nacobbus aberrans (Nematoda: Pratylenchidae) complex using integrative taxonomy P. Lax et al. 10.1111/zsc.12494
- Assessing the diversity of nematodes in the Store Mosse National Park (Sweden) using metabarcoding M. Ahmed et al. 10.3897/mbmg.8.111307
- Laimaphelenchus suberensis sp. nov. associated with Quercus suber in Portugal C. Maleita et al. 10.1007/s10658-017-1324-4
- Meloidogyne luci, a new root‐knot nematode parasitizing potato in Portugal C. Maleita et al. 10.1111/ppa.12755
- A new root-knot nematode, Meloidogyne vitis sp. nov. (Nematoda: Meloidogynidae), parasitizing grape in Yunnan Y. Yang et al. 10.1371/journal.pone.0245201
4 citations as recorded by crossref.
- The impact of high throughput sequencing on plant health diagnostics I. Adams et al. 10.1007/s10658-018-1570-0
- Comparison of morphological, DNA barcoding, and metabarcoding characterizations of freshwater nematode communities J. Schenk et al. 10.1002/ece3.6104
- Current advances in the identification of plant nematode diseases: From lab assays to in-field diagnostics H. Shao et al. 10.3389/fpls.2023.1106784
- Combining Traditional Taxonomy and Metabarcoding: Assemblage Structure of Nematodes in the Shelf Sediments of the Eastern Antarctic Peninsula G. Pantó et al. 10.3389/fmars.2021.629706
Saved (preprint)
Latest update: 18 Apr 2024
Short summary
This review covers the history and advances made in the area of nematode taxonomy. It highlights the success and limitations of the classical approach to nematode taxonomy and provides reader with a bit of background to the applications of protein and DNA-based methods for identification nematodes. The review also outlines the pros and cons of the use of DNA barcoding in nematology and explains how DNA metabarcoding has been applied in nematology through next-generation sequencing.
This review covers the history and advances made in the area of nematode taxonomy. It highlights...
