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<article xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:oasis="http://docs.oasis-open.org/ns/oasis-exchange/table" xml:lang="en" dtd-version="3.0">
  <front>
    <journal-meta><journal-id journal-id-type="publisher">SOIL</journal-id><journal-title-group>
    <journal-title>SOIL</journal-title>
    <abbrev-journal-title abbrev-type="publisher">SOIL</abbrev-journal-title><abbrev-journal-title abbrev-type="nlm-ta">SOIL</abbrev-journal-title>
  </journal-title-group><issn pub-type="epub">2199-398X</issn><publisher>
    <publisher-name>Copernicus Publications</publisher-name>
    <publisher-loc>Göttingen, Germany</publisher-loc>
  </publisher></journal-meta>
    <article-meta>
      <article-id pub-id-type="doi">10.5194/soil-5-265-2019</article-id><title-group><article-title>A new look at an old concept: using <inline-formula><mml:math id="M1" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi/><mml:mn mathvariant="normal">15</mml:mn></mml:msup><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> isotopomers to
understand the relationship between soil moisture and <inline-formula><mml:math id="M2" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> production
pathways</article-title><alt-title>A new look at an old concept</alt-title>
      </title-group><?xmltex \runningtitle{A new look at an old concept}?><?xmltex \runningauthor{K.~A.~Congreves et al.}?>
      <contrib-group>
        <contrib contrib-type="author" corresp="yes" rid="aff1">
          <name><surname>Congreves</surname><given-names>Katelyn A.</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Phan</surname><given-names>Trang</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff2">
          <name><surname>Farrell</surname><given-names>Richard E.</given-names></name>
          
        </contrib>
        <aff id="aff1"><label>1</label><institution>Department of Plant Sciences, University of Saskatchewan, Saskatoon, SK S7N 5A8, Canada</institution>
        </aff>
        <aff id="aff2"><label>2</label><institution>Department of Soil Science,
University of Saskatchewan, Saskatoon, SK S7N 5A8, Canada</institution>
        </aff>
      </contrib-group>
      <author-notes><corresp id="corr1">Kate A. Congreves (kate.congreves@usask.ca)</corresp></author-notes><pub-date><day>19</day><month>September</month><year>2019</year></pub-date>
      
      <volume>5</volume>
      <issue>2</issue>
      <fpage>265</fpage><lpage>274</lpage>
      <history>
        <date date-type="received"><day>3</day><month>May</month><year>2019</year></date>
           <date date-type="rev-request"><day>13</day><month>May</month><year>2019</year></date>
           <date date-type="rev-recd"><day>30</day><month>July</month><year>2019</year></date>
           <date date-type="accepted"><day>11</day><month>August</month><year>2019</year></date>
      </history>
      <permissions>
        <copyright-statement>Copyright: © 2019 </copyright-statement>
        <copyright-year>2019</copyright-year>
      <license license-type="open-access"><license-p>This work is licensed under the Creative Commons Attribution 4.0 International License. To view a copy of this licence, visit <ext-link ext-link-type="uri" xlink:href="https://creativecommons.org/licenses/by/4.0/">https://creativecommons.org/licenses/by/4.0/</ext-link></license-p></license></permissions><self-uri xlink:href="https://soil.copernicus.org/articles/.html">This article is available from https://soil.copernicus.org/articles/.html</self-uri><self-uri xlink:href="https://soil.copernicus.org/articles/.pdf">The full text article is available as a PDF file from https://soil.copernicus.org/articles/.pdf</self-uri>
      <abstract><title>Abstract</title>
    <p id="d1e135">Understanding the production pathways of potent greenhouse gases, such as
nitrous oxide (<inline-formula><mml:math id="M3" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>), is essential for accurate flux prediction and for
developing effective adaptation and mitigation strategies in response to
climate change. Yet there remain surprising gaps in our understanding and
precise quantification of the underlying production pathways – such as the
relationship between soil moisture and <inline-formula><mml:math id="M4" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> production pathways. A
powerful, but arguably underutilized, approach for quantifying the relative
contribution of nitrification and denitrification to <inline-formula><mml:math id="M5" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> production
involves determining <inline-formula><mml:math id="M6" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi/><mml:mn mathvariant="normal">15</mml:mn></mml:msup><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> isotopomers and <inline-formula><mml:math id="M7" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi/><mml:mn mathvariant="normal">15</mml:mn></mml:msup><mml:mi mathvariant="normal">N</mml:mi></mml:mrow></mml:math></inline-formula> site
preference (SP) via spectroscopic techniques. Using one such technique, we
conducted a short-term incubation where <inline-formula><mml:math id="M8" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> production and
<inline-formula><mml:math id="M9" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi/><mml:mn mathvariant="normal">15</mml:mn></mml:msup><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> isotopomers were measured 24 h after soil moisture
treatments of 40 % to 105 % water-filled pore space (WFPS) were established
for each of three soils that differed in nutrient levels, organic matter,
and texture. Relatively low <inline-formula><mml:math id="M10" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> fluxes and high SP values indicted
nitrification during dry soil conditions, whereas at higher soil moisture,
peak <inline-formula><mml:math id="M11" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> emissions coincided with a sharp decline in SP, indicating
denitrification. This pattern supports the classic <inline-formula><mml:math id="M12" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> production
curves from nitrification and denitrification as inferred by earlier
research; however, our isotopomer data enabled the quantification of source
partitioning for either pathway. At soil moisture levels &lt; 53 %
WFPS, the fraction of <inline-formula><mml:math id="M13" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> attributed to nitrification (<inline-formula><mml:math id="M14" display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mi mathvariant="normal">N</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>)
predominated but thereafter decreased rapidly with increasing soil moisture
(<inline-formula><mml:math id="M15" display="inline"><mml:mi>x</mml:mi></mml:math></inline-formula>), according to <inline-formula><mml:math id="M16" display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mi mathvariant="normal">N</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">3.19</mml:mn><mml:mo>-</mml:mo><mml:mn mathvariant="normal">0.041</mml:mn><mml:mi>x</mml:mi></mml:mrow></mml:math></inline-formula>, until a WFPS of 78 % was reached. Simultaneously, from WFPS of 53 % to
78 %, the fraction of <inline-formula><mml:math id="M17" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> that was attributed to denitrification
(<inline-formula><mml:math id="M18" display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mi mathvariant="normal">D</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) was modelled as
<inline-formula><mml:math id="M19" display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mi mathvariant="normal">D</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2.19</mml:mn><mml:mo>+</mml:mo><mml:mn mathvariant="normal">0.041</mml:mn><mml:mi>x</mml:mi></mml:mrow></mml:math></inline-formula>; at moisture levels of &gt; 78 %, denitrification completely
dominated. Clearly, the soil moisture level during transition is a key
regulator of <inline-formula><mml:math id="M20" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> production pathways. The presented equations may be
helpful for other researchers in estimating <inline-formula><mml:math id="M21" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> source partitioning when
soil moisture falls within the transition from nitrification to
denitrification.</p>
  </abstract>
    </article-meta>
  </front>
<body>
      

<sec id="Ch1.S1" sec-type="intro">
  <label>1</label><title>Introduction</title>
      <p id="d1e412">Agricultural soils are the largest source of anthropogenic <inline-formula><mml:math id="M22" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> emissions, accounting
for up to 66 % of total <inline-formula><mml:math id="M23" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> emissions (Environment
Canada, 2019). Understanding the mechanisms leading to the emission of this
potent greenhouse gas is essential for accurate flux prediction and for
developing effective adaptation and mitigation strategies in response to
climate change. Decades of research have strengthened our understanding of
<inline-formula><mml:math id="M24" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> fluxes – namely, how <inline-formula><mml:math id="M25" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> production is regulated by soil
oxygen, substrate availability, and microbial activity
(Butterbach-Bahl
et al., 2013; Chapuis-Lardy et al., 2007; Wagner-Riddle et al., 2017) as
well as how <inline-formula><mml:math id="M26" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> emission is regulated by advection, solubility, and
diffusion
(Balaine
et al., 2013; Clough et al., 2005). Indeed, our understanding of the
relationship between <inline-formula><mml:math id="M27" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> production and soil moisture has benefited
greatly from the use of <inline-formula><mml:math id="M28" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi/><mml:mn mathvariant="normal">15</mml:mn></mml:msup><mml:mi mathvariant="normal">N</mml:mi></mml:mrow></mml:math></inline-formula> tracers
(Bateman and Baggs, 2005; Stevens
and Laughlin, 1997; Groffman et al., 2006). However, there remain surprising
grey areas in our understanding of the underlying<?pagebreak page266?> mechanisms, with one such area
being the precise relationship between soil moisture and <inline-formula><mml:math id="M29" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> production
pathways, especially during the transition from one dominant pathway to
another (Bateman and Baggs, 2005).</p>
      <p id="d1e519">Nitrous oxide is a product of nitrification and
denitrification – microbially driven processes that depend on the aeration
status of the soil (Banerjee et
al., 2016; Barnard et al., 2005). As a result, the relative contributions of
nitrification and denitrification are often determined based on their
relationship to soil water-filled pore space (WFPS), which acts as a proxy
for aeration status. However, the widely cited relationship between soil
<inline-formula><mml:math id="M30" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> production and soil moisture (Fig. 1) is actually an educated
deduction that blends work from two different studies, from which the
<inline-formula><mml:math id="M31" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> production pathways are inferred
(Davidson, 1991; Linn and Doran,
1984). As such, it may be argued that the precise relationship between soil
water content and <inline-formula><mml:math id="M32" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> production mechanisms remains unclear and
requires more complete quantification. While previous research has provided
important steps towards better quantifying the relationship using <inline-formula><mml:math id="M33" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi/><mml:mn mathvariant="normal">15</mml:mn></mml:msup><mml:mi mathvariant="normal">N</mml:mi></mml:mrow></mml:math></inline-formula>
enrichment and acetylene inhibition techniques (Bateman and Baggs, 2005),
natural abundance <inline-formula><mml:math id="M34" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi/><mml:mn mathvariant="normal">15</mml:mn></mml:msup><mml:mi mathvariant="normal">N</mml:mi></mml:mrow></mml:math></inline-formula> techniques may provide superior information by
imposing fewer confounding effects on stepwise N transformations.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F1"><?xmltex \currentcnt{1}?><label>Figure 1</label><caption><p id="d1e587">Relative contributions of nitrification and
denitrification processes to <inline-formula><mml:math id="M35" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> production
as a function of water-filled pore space (adapted from Davidson, 1991).</p></caption>
        <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://soil.copernicus.org/articles/5/265/2019/soil-5-265-2019-f01.png"/>

      </fig>

      <p id="d1e610">Isotopomers – i.e., isomers having the same number of each isotopic atom
but differing in their position (IUPAC, 1997;
Ostrom and Ostrom, 2012) – provide a powerful and novel approach for
quantifying the relative contribution of <inline-formula><mml:math id="M36" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> producing processes via
nitrification and denitrification (Van
Groenigen et al., 2015). Early work focused on the intramolecular
distribution of <inline-formula><mml:math id="M37" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi/><mml:mn mathvariant="normal">15</mml:mn></mml:msup><mml:mi mathvariant="normal">N</mml:mi></mml:mrow></mml:math></inline-formula> within the linear <inline-formula><mml:math id="M38" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> molecule (Sutka
et al., 2006; Toyoda et al., 2005), investigations of atmospheric or oceanic
<inline-formula><mml:math id="M39" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> isotopomers
(Popp et al.,
2002; Toyoda and Yoshida, 1999; Yoshida and Toyoda, 2000), and soil-emitted
<inline-formula><mml:math id="M40" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> isotopomers
(Perez
et al., 2001; Yamulki et al., 2001). The isotopomers of <inline-formula><mml:math id="M41" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> (i.e.,
<inline-formula><mml:math id="M42" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi/><mml:mn mathvariant="normal">14</mml:mn></mml:msup><mml:msup><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup><mml:mi mathvariant="normal">NO</mml:mi></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M43" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi/><mml:mn mathvariant="normal">15</mml:mn></mml:msup><mml:msup><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">14</mml:mn></mml:msup><mml:mi mathvariant="normal">NO</mml:mi></mml:mrow></mml:math></inline-formula>) can be quantified using advanced
laser spectroscopic approaches – including cavity ring-down spectroscopy
(CRDS) – that enable the intramolecular <inline-formula><mml:math id="M44" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi/><mml:mn mathvariant="normal">15</mml:mn></mml:msup><mml:mi mathvariant="normal">N</mml:mi></mml:mrow></mml:math></inline-formula> distribution of <inline-formula><mml:math id="M45" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> to
be determined (Mohn et al., 2014). The
difference between the abundance of <inline-formula><mml:math id="M46" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi/><mml:mn mathvariant="normal">15</mml:mn></mml:msup><mml:mi mathvariant="normal">N</mml:mi></mml:mrow></mml:math></inline-formula> within the central (alpha –
<inline-formula><mml:math id="M47" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>) and the terminal (beta – <inline-formula><mml:math id="M48" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>) N atoms of the linear <inline-formula><mml:math id="M49" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>
molecule is expressed as site preference (SP), and high SP values of 13 to
37 ‰ are attributed to nitrification (hydroxylamine
oxidation), while SP values of 0 ‰ or less indicate
nitrite or nitrate reduction (denitrification and nitrifier denitrification; Denk
et al., 2017; Ostrom et al., 2010; Sutka et al., 2006; Toyoda et al., 2005).
The underlying reason for the distinct differences in SP values of <inline-formula><mml:math id="M50" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>
from either microbial pathway is due to primary kinetic isotope effects when
<inline-formula><mml:math id="M51" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> is produced (Popp et al., 2002).</p>
      <p id="d1e816">Our objective was to use <inline-formula><mml:math id="M52" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi/><mml:mn mathvariant="normal">15</mml:mn></mml:msup><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> isotopomers to precisely quantify
the relationship between soil moisture and <inline-formula><mml:math id="M53" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> production in soils
differing in soil nutrient level, organic matter, and texture.</p>
</sec>
<sec id="Ch1.S2">
  <label>2</label><title>Materials and methods</title>
<sec id="Ch1.S2.SS1">
  <label>2.1</label><title>Soil collection and characterization</title>
      <p id="d1e864">Surface (0–10 cm) soils representing different nutrient levels and texture
classes were collected from three locations in the Dark Brown soil zone in
Saskatchewan, Canada. The soils – classified as Dark Brown chernozems of the
Sutherland, Asquith, and Bradwell associations – were collected using a
shovel and air dried, and sub-samples were shipped to A&amp;L Laboratories Inc.
(London, ON) for analysis (Table 1). For additional characterization,
sub-samples were analyzed at the University of Saskatchewan for equilibrium
soil water content, soil inorganic N levels, soil total N concentration, and
<inline-formula><mml:math id="M54" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi/><mml:mn mathvariant="normal">15</mml:mn></mml:msup><mml:mi mathvariant="normal">N</mml:mi></mml:mrow></mml:math></inline-formula> abundance (Table 1). The equilibrium soil water was determined via
the long-column method based on the average of four technical replicates
(Reynolds and Topp, 2007). Initial soil <inline-formula><mml:math id="M55" display="inline"><mml:mrow class="chem"><mml:msubsup><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> and
<inline-formula><mml:math id="M56" display="inline"><mml:mrow class="chem"><mml:msubsup><mml:mi mathvariant="normal">NH</mml:mi><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> concentrations were determined in quadruplicate using the KCl
extraction method of Maynard et al. (2007); briefly, 5 g
of soil was mixed with 50 mL of 2 M KCl, shaken for 30 min, and filtered through
Whatman 42 filter paper; the extracts were frozen at <inline-formula><mml:math id="M57" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>20 <inline-formula><mml:math id="M58" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C until
they could be analyzed. For analysis, the extracts were thawed and allowed
to equilibrate to room temperature before being analyzed using air-segmented
(continuous) flow analysis with a SEAL AA3 HR chemistry analyzer (SEAL
Analytical, Kitchener, ON). Soil total N concentration (%) and <inline-formula><mml:math id="M59" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi/><mml:mn mathvariant="normal">15</mml:mn></mml:msup><mml:mi mathvariant="normal">N</mml:mi></mml:mrow></mml:math></inline-formula>
content (atom %) were determined in duplicate using a Costech ECS 4010
elemental analyzer (Costech Analytical Technologies Inc., Valencia, CA)
coupled to a high-precision Delta V mass spectrometer (Bremen, Germany) with
a precision of 0.06 ‰ for <inline-formula><mml:math id="M60" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup><mml:mi mathvariant="normal">N</mml:mi></mml:mrow></mml:math></inline-formula>. Chickpea
flour with an atom % <inline-formula><mml:math id="M61" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi/><mml:mn mathvariant="normal">15</mml:mn></mml:msup><mml:mi mathvariant="normal">N</mml:mi></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M62" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 0.3691 was used as a lab reference.</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T1" specific-use="star"><?xmltex \currentcnt{1}?><label>Table 1</label><caption><p id="d1e969">Soil physical and chemical characteristics.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="4">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="right"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:colspec colnum="4" colname="col4" align="right"/>
     <oasis:thead>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">Sutherland</oasis:entry>
         <oasis:entry colname="col3">Asquith</oasis:entry>
         <oasis:entry colname="col4">Bradwell</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>
         <oasis:entry colname="col1">Previous cropping history</oasis:entry>
         <oasis:entry colname="col2">Vegetable crops</oasis:entry>
         <oasis:entry colname="col3">Fodder crops</oasis:entry>
         <oasis:entry colname="col4">Field crops</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Texture class</oasis:entry>
         <oasis:entry colname="col2">Silty clay loam</oasis:entry>
         <oasis:entry colname="col3">Sandy loam</oasis:entry>
         <oasis:entry colname="col4">Loam</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Organic matter (%)</oasis:entry>
         <oasis:entry colname="col2">5.9</oasis:entry>
         <oasis:entry colname="col3">3.9</oasis:entry>
         <oasis:entry colname="col4">2.7</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Equilibrium soil water (<inline-formula><mml:math id="M63" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">θ</mml:mi><mml:mi mathvariant="normal">g</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>)</oasis:entry>
         <oasis:entry colname="col2">0.46</oasis:entry>
         <oasis:entry colname="col3">0.40</oasis:entry>
         <oasis:entry colname="col4">0.33</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">pH</oasis:entry>
         <oasis:entry colname="col2">7.6</oasis:entry>
         <oasis:entry colname="col3">7.5</oasis:entry>
         <oasis:entry colname="col4">7.9</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Cation exchange capacity (CEC; cmol<inline-formula><mml:math id="M64" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">c</mml:mi></mml:msub></mml:math></inline-formula> kg<inline-formula><mml:math id="M65" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>)</oasis:entry>
         <oasis:entry colname="col2">34.8</oasis:entry>
         <oasis:entry colname="col3">18.6</oasis:entry>
         <oasis:entry colname="col4">16.9</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Total N (%)</oasis:entry>
         <oasis:entry colname="col2">0.42</oasis:entry>
         <oasis:entry colname="col3">0.21</oasis:entry>
         <oasis:entry colname="col4">0.16</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Total <inline-formula><mml:math id="M66" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi/><mml:mn mathvariant="normal">15</mml:mn></mml:msup><mml:mi mathvariant="normal">N</mml:mi></mml:mrow></mml:math></inline-formula> (atom %)</oasis:entry>
         <oasis:entry colname="col2">0.371</oasis:entry>
         <oasis:entry colname="col3">0.370</oasis:entry>
         <oasis:entry colname="col4">0.368</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Nitrate (<inline-formula><mml:math id="M67" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>g g<inline-formula><mml:math id="M68" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>)</oasis:entry>
         <oasis:entry colname="col2">194</oasis:entry>
         <oasis:entry colname="col3">35</oasis:entry>
         <oasis:entry colname="col4">10</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Ammonium (<inline-formula><mml:math id="M69" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>g g<inline-formula><mml:math id="M70" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>)</oasis:entry>
         <oasis:entry colname="col2">3.8</oasis:entry>
         <oasis:entry colname="col3">1.7</oasis:entry>
         <oasis:entry colname="col4">5.2</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Bray phosphorus (ppm)</oasis:entry>
         <oasis:entry colname="col2">542</oasis:entry>
         <oasis:entry colname="col3">190</oasis:entry>
         <oasis:entry colname="col4">23</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Potassium (ppm)</oasis:entry>
         <oasis:entry colname="col2">1415</oasis:entry>
         <oasis:entry colname="col3">544</oasis:entry>
         <oasis:entry colname="col4">329</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Sulfur (ppm)</oasis:entry>
         <oasis:entry colname="col2">49</oasis:entry>
         <oasis:entry colname="col3">28</oasis:entry>
         <oasis:entry colname="col4">13</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Magnesium (ppm)</oasis:entry>
         <oasis:entry colname="col2">925</oasis:entry>
         <oasis:entry colname="col3">448</oasis:entry>
         <oasis:entry colname="col4">432</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Calcium (ppm)</oasis:entry>
         <oasis:entry colname="col2">4650</oasis:entry>
         <oasis:entry colname="col3">2670</oasis:entry>
         <oasis:entry colname="col4">2490</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

</sec>
<?pagebreak page267?><sec id="Ch1.S2.SS2">
  <label>2.2</label><title>Incubation experimental design</title>
      <p id="d1e1325">For the incubation study, soil microcosms were established over a range of
moisture treatments for each soil and arranged in a completely randomized
design with four replicates. For each microcosm, sieved (2 mm mesh screen)
and air-dried soil was packed into a small (5.9 cm inner diameter, 0.80 cm
tall) plastic petri dish. The mass of soil needed to fill the petri dish
varied with texture – ranging from 22.0   to 29.0 g – and yielded soil bulk
densities of 1.01, 1.10, and 1.33 g cm<inline-formula><mml:math id="M71" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> for the Sutherland, Asquith,
and Bradwell soils, respectively. While the quantities and bulk densities
differed for each soil type, it was essential that the soil completely fill
the petri dishes to avoid any differences in soil surface boundary layer or
gas diffusion that would alter <inline-formula><mml:math id="M72" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> emission.</p>
      <p id="d1e1353">Soil moisture treatments were based on gravimetric soil water content
(<inline-formula><mml:math id="M73" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">θ</mml:mi><mml:mi mathvariant="normal">g</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) established by adding deionized water to the soil microcosms,
using a fine mist of water applied from a manual spray bottle, to a
predetermined weight. Gravimetric soil moisture content was varied to yield
a WFPS between 40 % and 105 %.</p>
      <p id="d1e1367">The gravimetric water, volumetric water (<inline-formula><mml:math id="M74" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">θ</mml:mi><mml:mi mathvariant="normal">v</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>), and WFPS were determined according
to Eqs. (1)–(3):

                <disp-formula specific-use="gather" content-type="numbered"><mml:math id="M75" display="block"><mml:mtable displaystyle="true"><mml:mlabeledtr id="Ch1.E1"><mml:mtd><mml:mtext>1</mml:mtext></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:mrow><mml:msub><mml:mi mathvariant="italic">θ</mml:mi><mml:mi mathvariant="normal">g</mml:mi></mml:msub><mml:mfenced open="(" close=")"><mml:mrow><mml:mrow class="unit"><mml:mi mathvariant="normal">g</mml:mi></mml:mrow><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mrow class="unit"><mml:mi mathvariant="normal">g</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">soil</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:mrow></mml:mfenced><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mtext>water added (g)</mml:mtext><mml:mtext>dry soil (g)</mml:mtext></mml:mfrac></mml:mstyle></mml:mrow><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr><mml:mlabeledtr id="Ch1.E2"><mml:mtd><mml:mtext>2</mml:mtext></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:msub><mml:mi mathvariant="italic">θ</mml:mi><mml:mi mathvariant="normal">v</mml:mi></mml:msub><mml:mfenced close=")" open="("><mml:mrow><mml:mrow class="unit"><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:mrow><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mrow class="unit"><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msup><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">soil</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow><mml:mo>=</mml:mo><mml:msub><mml:mi mathvariant="italic">θ</mml:mi><mml:mi mathvariant="normal">g</mml:mi></mml:msub><mml:mo>×</mml:mo><mml:mi mathvariant="normal">BD</mml:mi></mml:mrow></mml:mfenced><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr><mml:mlabeledtr id="Ch1.E3"><mml:mtd><mml:mtext>3</mml:mtext></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:mi mathvariant="italic">%</mml:mi><mml:mi mathvariant="normal">WFPS</mml:mi><mml:mo>=</mml:mo><mml:mfenced close="]" open="["><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msub><mml:mi mathvariant="italic">θ</mml:mi><mml:mi mathvariant="normal">v</mml:mi></mml:msub></mml:mrow><mml:mrow><mml:mfenced close=")" open="("><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>-</mml:mo><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mi mathvariant="normal">BD</mml:mi><mml:mi mathvariant="normal">PD</mml:mi></mml:mfrac></mml:mstyle></mml:mrow></mml:mfenced></mml:mrow></mml:mfrac></mml:mstyle></mml:mfenced><mml:mo>×</mml:mo><mml:mn mathvariant="normal">100</mml:mn><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr></mml:mtable></mml:math></disp-formula>

            where BD denotes soil bulk density and PD denotes particle density (PD),
which was assumed to be 2.65 g cm<inline-formula><mml:math id="M76" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>.</p>
      <p id="d1e1548">Immediately after moistening the soil microcosm, the petri dish was sealed
inside a 1 L wide-mouth mason jar fitted with a gas sampling septum, and the time
of sealing was recorded. Blank jars containing an empty petri dish were set
up to account for background (atmospheric) gas concentrations. The
microcosms were incubated at 22 <inline-formula><mml:math id="M77" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C <inline-formula><mml:math id="M78" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 1 <inline-formula><mml:math id="M79" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C for
24 h.</p>
</sec>
<sec id="Ch1.S2.SS3">
  <label>2.3</label><title>Sampling and analysis</title>
      <p id="d1e1584">After 24 h, a headspace gas sample was collected from each microcosm (with
the time of sampling recorded) using a 20 mL plastic syringe fitted with a
22-gauge needle, injected into an evacuated 12 mL
Exetainer<sup>®</sup> tube (Labco Limited, UK), and analyzed
for <inline-formula><mml:math id="M80" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M81" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, and <inline-formula><mml:math id="M82" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> concentration using gas chromatography
(Bruker 450 GC, Bruker Biosciences, Billerica, MA). Immediately thereafter,
a separate 30 mL gas sample was collected from each microcosm, injected into
an evacuated 12 mL Exetainer<sup>®</sup> tube, and analyzed
for <inline-formula><mml:math id="M83" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi/><mml:mn mathvariant="normal">15</mml:mn></mml:msup><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> concentration, <inline-formula><mml:math id="M84" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mi mathvariant="italic">α</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M85" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mi mathvariant="italic">β</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, and <inline-formula><mml:math id="M86" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">18</mml:mn></mml:msup><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> using a CRDS-based Picarro
G5131-<inline-formula><mml:math id="M87" display="inline"><mml:mi>i</mml:mi></mml:math></inline-formula> isotopic <inline-formula><mml:math id="M88" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> analyzer (Picarro Inc., Santa Clara, CA).</p>
</sec>
<sec id="Ch1.S2.SS4">
  <label>2.4</label><?xmltex \opttitle{Isotopomer approach using {$\protect\chem{{}^{{{15}}}N}$} site
preference and {$\protect\chem{\delta^{{{18}}}O}$} for {$\protect\chem{N_{{{2}}}O}$}
source identification}?><title>Isotopomer approach using <inline-formula><mml:math id="M89" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi/><mml:mn mathvariant="normal">15</mml:mn></mml:msup><mml:mi mathvariant="normal">N</mml:mi></mml:mrow></mml:math></inline-formula> site
preference and <inline-formula><mml:math id="M90" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">18</mml:mn></mml:msup><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> for <inline-formula><mml:math id="M91" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>
source identification</title>
      <?pagebreak page268?><p id="d1e1758">Site preference was calculated by subtracting the abundance of <inline-formula><mml:math id="M92" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi/><mml:mn mathvariant="normal">15</mml:mn></mml:msup><mml:mi mathvariant="normal">N</mml:mi></mml:mrow></mml:math></inline-formula> from
the terminal N atom (beta – <inline-formula><mml:math id="M93" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>) from that of the central (alpha –
<inline-formula><mml:math id="M94" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>) N atom. The fraction of <inline-formula><mml:math id="M95" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> derived from hydroxylamine
oxidation during nitrification (<inline-formula><mml:math id="M96" display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mi mathvariant="normal">N</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) or the reduction of nitrate or
nitrite during denitrification (<inline-formula><mml:math id="M97" display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mi mathvariant="normal">D</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) was estimated for each soil by
adopting the isotopomer mixing approach used by others
(Deppe
et al., 2017; Lewicka-Szczebak et al., 2017; Zou et al., 2014) and which
use the <inline-formula><mml:math id="M98" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi/><mml:mn mathvariant="normal">15</mml:mn></mml:msup><mml:mi mathvariant="normal">N</mml:mi></mml:mrow></mml:math></inline-formula> SP and <inline-formula><mml:math id="M99" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">18</mml:mn></mml:msup><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> values of gas samples collected from the
soils. As suggested by Lewicka-Szczebak et al. (2017) and by Well et al. (2012), and because SP was more closely correlated to <inline-formula><mml:math id="M100" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">18</mml:mn></mml:msup><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> (<inline-formula><mml:math id="M101" display="inline"><mml:mrow><mml:mi>r</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.906</mml:mn></mml:mrow></mml:math></inline-formula>) than <inline-formula><mml:math id="M102" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup><mml:mi mathvariant="normal">N</mml:mi></mml:mrow></mml:math></inline-formula> (<inline-formula><mml:math id="M103" display="inline"><mml:mrow><mml:mi>r</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.849</mml:mn></mml:mrow></mml:math></inline-formula>), we used the relationship between
<inline-formula><mml:math id="M104" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup><mml:mi mathvariant="normal">N</mml:mi></mml:mrow></mml:math></inline-formula> SP and <inline-formula><mml:math id="M105" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">18</mml:mn></mml:msup><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> instead of <inline-formula><mml:math id="M106" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup><mml:mi mathvariant="normal">N</mml:mi></mml:mrow></mml:math></inline-formula> SP and bulk <inline-formula><mml:math id="M107" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup><mml:mi mathvariant="normal">N</mml:mi></mml:mrow></mml:math></inline-formula>.
Equations (4) and (5) show the source partitioning calculations:

                <disp-formula specific-use="gather" content-type="numbered"><mml:math id="M108" display="block"><mml:mtable displaystyle="true"><mml:mlabeledtr id="Ch1.E4"><mml:mtd><mml:mtext>4</mml:mtext></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:msub><mml:mi>F</mml:mi><mml:mi mathvariant="normal">N</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msub><mml:mi mathvariant="normal">SP</mml:mi><mml:mi>x</mml:mi></mml:msub><mml:mo>-</mml:mo><mml:msub><mml:mi mathvariant="normal">SP</mml:mi><mml:mi mathvariant="normal">D</mml:mi></mml:msub></mml:mrow><mml:mrow><mml:msub><mml:mi mathvariant="normal">SP</mml:mi><mml:mi mathvariant="normal">N</mml:mi></mml:msub><mml:mo>-</mml:mo><mml:msub><mml:mi mathvariant="normal">SP</mml:mi><mml:mi mathvariant="normal">D</mml:mi></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr><mml:mlabeledtr id="Ch1.E5"><mml:mtd><mml:mtext>5</mml:mtext></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:msub><mml:mi>F</mml:mi><mml:mi mathvariant="normal">D</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>-</mml:mo><mml:msub><mml:mi>F</mml:mi><mml:mi mathvariant="normal">N</mml:mi></mml:msub><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr></mml:mtable></mml:math></disp-formula>

            where <inline-formula><mml:math id="M109" display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mi mathvariant="normal">N</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M110" display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mi mathvariant="normal">D</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> indicate the fraction of <inline-formula><mml:math id="M111" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> derived from
nitrification or denitrification, respectively; SP denotes the site
preference for the sample (SP<inline-formula><mml:math id="M112" display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula>) and the endmembers for nitrification
(SP<inline-formula><mml:math id="M113" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">N</mml:mi></mml:msub></mml:math></inline-formula>) and denitrification (SP<inline-formula><mml:math id="M114" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">D</mml:mi></mml:msub></mml:math></inline-formula>).</p>
      <p id="d1e2089">Rather than relying on average literature-derived endmembers like in previous
work
(Deppe
et al., 2017; Lewicka-Szczebak et al., 2017), we used soil-specific
endmembers derived from our data to perform the linear mixed model. This is
because we measured a wide range of soil WFPS treatments with high frequency
between dry and moist conditions for each soil, enabling us to determine the
point at which the <inline-formula><mml:math id="M115" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup><mml:mi mathvariant="normal">N</mml:mi></mml:mrow></mml:math></inline-formula> SP or <inline-formula><mml:math id="M116" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">18</mml:mn></mml:msup><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> values either dropped or
increased as soil WFPS changed (as precisely as the data permitted),
indicating a transition from nitrification to denitrification. This approach
is consistent with earlier recommendations that data be collected at high
enough frequencies to capture gradual changes in isotope values as
influenced by traditional proxies (i.e., gradual changes in soil WFPS; Decock and Six, 2013a). However, it must be
noted that the underlying assumption is that the soil-specific endmembers
are more reflective of the transition from nitrification to denitrification
in each of the soils tested herein than general literature-derived
endmembers would be for any one soil. Moreover, it is assumed that the
endmembers represent <inline-formula><mml:math id="M117" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> produced when the sole source was either
nitrification or denitrification. Endmembers for SP<inline-formula><mml:math id="M118" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">D</mml:mi></mml:msub></mml:math></inline-formula> to SP<inline-formula><mml:math id="M119" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">N</mml:mi></mml:msub></mml:math></inline-formula> were
set at 2.0 to 23.7, 0.7 to 21.7, and 14.4 to 23.3 for the Sutherland, Asquith,
and Bradwell soils, respectively. Endmembers for <inline-formula><mml:math id="M120" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">18</mml:mn></mml:msup><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mi mathvariant="normal">D</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> to
<inline-formula><mml:math id="M121" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">18</mml:mn></mml:msup><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mi mathvariant="normal">N</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> were set at 16.0 to 35.1, 18.8 to 39.5, and 25.4 to 34.2 for
the Sutherland, Asquith, and Bradwell soils, respectively. The endmember
ranges were based on our data, where SP<inline-formula><mml:math id="M122" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">N</mml:mi></mml:msub></mml:math></inline-formula> <inline-formula><mml:math id="M123" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M124" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">18</mml:mn></mml:msup><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mi mathvariant="normal">N</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> represented
the average values before the transition zone from nitrification- to
denitrification-dominated <inline-formula><mml:math id="M125" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> production; SP<inline-formula><mml:math id="M126" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">D</mml:mi></mml:msub></mml:math></inline-formula> <inline-formula><mml:math id="M127" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M128" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">18</mml:mn></mml:msup><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mi mathvariant="normal">D</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>
represented the lowest values during denitrification for each soil type. For
source partitioning, the influence of <inline-formula><mml:math id="M129" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> reduction to <inline-formula><mml:math id="M130" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> on SP
was taken into account by using the reduction and mixing line intercept
approach – as described by
Deppe et al. (2017)
and Lewicka-Szczebak et al. (2017). However, rather than using an estimated
reduction line derived from the literature, we calculated the slope and
intercept for the reduction line based on our data: the SP <inline-formula><mml:math id="M131" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M132" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">18</mml:mn></mml:msup><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> plot for the soil moisture range after the transition zone for each soil
type. The reduction line was placed through the average SP value of gas
samples derived from the &lt; 60 % water-filled pore space range for each
soil. The point of intersection between the endmember mixing line and the
reduction line gave the estimated initial isotope values (SP<inline-formula><mml:math id="M133" display="inline"><mml:msup><mml:mi/><mml:mo>*</mml:mo></mml:msup></mml:math></inline-formula> and <inline-formula><mml:math id="M134" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi/><mml:mn mathvariant="normal">18</mml:mn></mml:msup><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>) of
produced <inline-formula><mml:math id="M135" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> before reduction to <inline-formula><mml:math id="M136" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>. In the soil moisture range
after the transition from nitrification to denitrification, if the SP<inline-formula><mml:math id="M137" display="inline"><mml:msup><mml:mi/><mml:mo>*</mml:mo></mml:msup></mml:math></inline-formula> value
was higher than the measured SP value of the gas sample, the measured SP
value was used, since <inline-formula><mml:math id="M138" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> reduction was assumed to be negligible. The
<inline-formula><mml:math id="M139" display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mi mathvariant="normal">N</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M140" display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mi mathvariant="normal">D</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> were then calculated from SP values (or SP<inline-formula><mml:math id="M141" display="inline"><mml:msup><mml:mi/><mml:mo>*</mml:mo></mml:msup></mml:math></inline-formula>) and the SP
values of the nitrification and denitrification endmembers. This calculation
was done for each soil type separately.</p>
</sec>
<sec id="Ch1.S2.SS5">
  <label>2.5</label><title>Statistical analysis</title>
      <p id="d1e2413">Correlation and linear regression analyses were conducted in CoStat (CoStat ver. 6.451 (CoHort Software, Monterey, CA)) to determine associations between soil moisture and SP.</p>
</sec>
</sec>
<sec id="Ch1.S3">
  <label>3</label><title>Results and discussion</title>
<sec id="Ch1.S3.SS1">
  <label>3.1</label><title>Nitrous oxide production </title>
      <p id="d1e2432">Nitrous oxide production during the 24 h incubation varied dramatically
among the three soils, with peak <inline-formula><mml:math id="M142" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> production occurring at soil water
contents equivalent to 70 %–80 % WFPS (Fig. 2). Peak <inline-formula><mml:math id="M143" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> production
was 100-fold greater from the Sutherland soil (100 ng <inline-formula><mml:math id="M144" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>-N g<inline-formula><mml:math id="M145" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>
24 h<inline-formula><mml:math id="M146" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>) compared to the Bradwell soil (1 ng <inline-formula><mml:math id="M147" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>-N g<inline-formula><mml:math id="M148" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>
24 h<inline-formula><mml:math id="M149" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>), and about 4-fold greater than that from the Asquith soil (24 ng <inline-formula><mml:math id="M150" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>-N g<inline-formula><mml:math id="M151" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> 24 h<inline-formula><mml:math id="M152" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>; Fig. 2). This differentiation follows
the same trend as soil inorganic N availability and soil organic matter,
which decreased in the order Sutherland &gt; Asquith &gt; Bradwell (Table 1).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F2" specific-use="star"><?xmltex \currentcnt{2}?><label>Figure 2</label><caption><p id="d1e2575"><bold>(a, b, c)</bold> <inline-formula><mml:math id="M153" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>-N
production as influenced by soil water-filled pore space (WFPS; black;
left axis); corresponding
<inline-formula><mml:math id="M154" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi/><mml:mn mathvariant="normal">15</mml:mn></mml:msup><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>
isotopomer site preference (SP; blue; right axis). <bold>(d, e, f)</bold> <inline-formula><mml:math id="M155" display="inline"><mml:mi mathvariant="italic">δ</mml:mi></mml:math></inline-formula>bulk<inline-formula><mml:math id="M156" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi/><mml:mn mathvariant="normal">15</mml:mn></mml:msup><mml:mi mathvariant="normal">N</mml:mi></mml:mrow></mml:math></inline-formula> (black; left axis) and <inline-formula><mml:math id="M157" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">18</mml:mn></mml:msup><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> (blue; right axis) of emitted
<inline-formula><mml:math id="M158" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> as influenced by soil water-filled pore
space (WFPS). Note: <inline-formula><mml:math id="M159" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> emissions were
plotted on a log<inline-formula><mml:math id="M160" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:math></inline-formula> scale to accommodate the
large range in emissions from the different soils. Data points represent
means (<inline-formula><mml:math id="M161" display="inline"><mml:mrow><mml:mi>n</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">4</mml:mn></mml:mrow></mml:math></inline-formula>), and bars represent the standard errors.</p></caption>
          <?xmltex \igopts{width=369.885827pt}?><graphic xlink:href="https://soil.copernicus.org/articles/5/265/2019/soil-5-265-2019-f02.png"/>

        </fig>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T2" specific-use="star"><?xmltex \currentcnt{2}?><label>Table 2</label><caption><p id="d1e2702">Linear regressions between
<inline-formula><mml:math id="M162" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi/><mml:mn mathvariant="normal">15</mml:mn></mml:msup><mml:mi mathvariant="normal">N</mml:mi></mml:mrow></mml:math></inline-formula> site preference and soil water-filled
pore space (%) during three soil moisture regions for each soil type (i) before the transition from nitrification, (ii) during the transition from
nitrification to denitrification, and (iii) after the transition to
denitrification. Note: “ns” denotes not significant whereas <inline-formula><mml:math id="M163" display="inline"><mml:msup><mml:mi/><mml:mo>*</mml:mo></mml:msup></mml:math></inline-formula> and <inline-formula><mml:math id="M164" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>*</mml:mo><mml:mo>*</mml:mo></mml:mrow></mml:msup></mml:math></inline-formula> denote significance at <inline-formula><mml:math id="M165" display="inline"><mml:mrow><mml:mi>p</mml:mi><mml:mi mathvariant="italic">&lt;</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mn mathvariant="normal">0.05</mml:mn></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M166" display="inline"><mml:mrow><mml:mi>p</mml:mi><mml:mi mathvariant="italic">&lt;</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mn mathvariant="normal">0.01</mml:mn></mml:mrow></mml:math></inline-formula>, respectively.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="6">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="right"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:colspec colnum="4" colname="col4" align="right"/>
     <oasis:colspec colnum="5" colname="col5" align="right"/>
     <oasis:colspec colnum="6" colname="col6" align="left"/>
     <oasis:thead>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">Soil type</oasis:entry>
         <oasis:entry colname="col2">WFPS (%)</oasis:entry>
         <oasis:entry colname="col3">Slope</oasis:entry>
         <oasis:entry colname="col4">Intercept</oasis:entry>
         <oasis:entry colname="col5">Pearson <inline-formula><mml:math id="M167" display="inline"><mml:mi>r</mml:mi></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col6"><inline-formula><mml:math id="M168" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula> value</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row rowsep="1">
         <oasis:entry namest="col1" nameend="col6">Before transition </oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Sutherland</oasis:entry>
         <oasis:entry colname="col2">&lt; 64</oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M169" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.049</oasis:entry>
         <oasis:entry colname="col4">26.69</oasis:entry>
         <oasis:entry colname="col5"><inline-formula><mml:math id="M170" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.30</oasis:entry>
         <oasis:entry colname="col6">0.4660<inline-formula><mml:math id="M171" display="inline"><mml:msup><mml:mi/><mml:mi mathvariant="normal">ns</mml:mi></mml:msup></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Asquith</oasis:entry>
         <oasis:entry colname="col2">&lt; 58</oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M172" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.004</oasis:entry>
         <oasis:entry colname="col4">22.04</oasis:entry>
         <oasis:entry colname="col5"><inline-formula><mml:math id="M173" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.04</oasis:entry>
         <oasis:entry colname="col6">0.8973<inline-formula><mml:math id="M174" display="inline"><mml:msup><mml:mi/><mml:mi mathvariant="normal">ns</mml:mi></mml:msup></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">Bradwell</oasis:entry>
         <oasis:entry colname="col2">&lt; 63</oasis:entry>
         <oasis:entry colname="col3">0.010</oasis:entry>
         <oasis:entry colname="col4">22.69</oasis:entry>
         <oasis:entry colname="col5">0.14</oasis:entry>
         <oasis:entry colname="col6">0.6781<inline-formula><mml:math id="M175" display="inline"><mml:msup><mml:mi/><mml:mi mathvariant="normal">ns</mml:mi></mml:msup></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry namest="col1" nameend="col6">During transition </oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Sutherland</oasis:entry>
         <oasis:entry colname="col2">64–83</oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M176" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.99</oasis:entry>
         <oasis:entry colname="col4">81.62</oasis:entry>
         <oasis:entry colname="col5">0.88</oasis:entry>
         <oasis:entry colname="col6">0.0214<inline-formula><mml:math id="M177" display="inline"><mml:msup><mml:mi/><mml:mo>*</mml:mo></mml:msup></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Asquith</oasis:entry>
         <oasis:entry colname="col2">58–73</oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M178" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1.19</oasis:entry>
         <oasis:entry colname="col4">85.75</oasis:entry>
         <oasis:entry colname="col5"><inline-formula><mml:math id="M179" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.89</oasis:entry>
         <oasis:entry colname="col6">0.0067<inline-formula><mml:math id="M180" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>*</mml:mo><mml:mo>*</mml:mo></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">Bradwell</oasis:entry>
         <oasis:entry colname="col2">63–75</oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M181" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.59</oasis:entry>
         <oasis:entry colname="col4">58.29</oasis:entry>
         <oasis:entry colname="col5"><inline-formula><mml:math id="M182" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.99</oasis:entry>
         <oasis:entry colname="col6">0.0004*</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry namest="col1" nameend="col6">After transition </oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Sutherland</oasis:entry>
         <oasis:entry colname="col2">&gt; 83</oasis:entry>
         <oasis:entry colname="col3">0.065</oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M183" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>3.01</oasis:entry>
         <oasis:entry colname="col5">0.86</oasis:entry>
         <oasis:entry colname="col6">0.0126<inline-formula><mml:math id="M184" display="inline"><mml:msup><mml:mi/><mml:mo>*</mml:mo></mml:msup></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Asquith</oasis:entry>
         <oasis:entry colname="col2">&gt; 73</oasis:entry>
         <oasis:entry colname="col3">0.072</oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M185" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>4.77</oasis:entry>
         <oasis:entry colname="col5">0.99</oasis:entry>
         <oasis:entry colname="col6">0.0064<inline-formula><mml:math id="M186" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>*</mml:mo><mml:mo>*</mml:mo></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Bradwell</oasis:entry>
         <oasis:entry colname="col2">&gt; 75</oasis:entry>
         <oasis:entry colname="col3">0.262</oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M187" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>4.47</oasis:entry>
         <oasis:entry colname="col5">0.94</oasis:entry>
         <oasis:entry colname="col6">0.0154<inline-formula><mml:math id="M188" display="inline"><mml:msup><mml:mi/><mml:mo>*</mml:mo></mml:msup></mml:math></inline-formula></oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

      <p id="d1e3183">Regardless of the amount of <inline-formula><mml:math id="M189" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> evolved, there were similarities in how
soil moisture influenced relative <inline-formula><mml:math id="M190" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> production. For all soil types,
relatively low <inline-formula><mml:math id="M191" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> fluxes were associated with drier soil treatments;
<inline-formula><mml:math id="M192" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> fluxes were incrementally magnified as soil moisture levels
increased from about 55 % to 80 % WFPS (Fig. 2a, b, and c). At soil
moisture levels exceeding <inline-formula><mml:math id="M193" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">80</mml:mn></mml:mrow></mml:math></inline-formula> % WFPS, fluxes either
remained relatively high, as was the case for the Sutherland soil, or
decreased slightly, as was observed for the Asquith and Bradwell soils.</p>
</sec>
<sec id="Ch1.S3.SS2">
  <label>3.2</label><?xmltex \opttitle{Nitrous oxide {$\protect\chem{{}^{{{15}}}N}$} site preference, {$\protect\chem{\delta^{{{15}}}N}$}, and {$\protect\chem{\delta^{{{18}}}O}$} }?><title>Nitrous oxide <inline-formula><mml:math id="M194" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi/><mml:mn mathvariant="normal">15</mml:mn></mml:msup><mml:mi mathvariant="normal">N</mml:mi></mml:mrow></mml:math></inline-formula> site preference, <inline-formula><mml:math id="M195" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup><mml:mi mathvariant="normal">N</mml:mi></mml:mrow></mml:math></inline-formula>, and <inline-formula><mml:math id="M196" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">18</mml:mn></mml:msup><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> </title>
      <p id="d1e3295">Not only total <inline-formula><mml:math id="M197" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> concentration, but the <inline-formula><mml:math id="M198" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi/><mml:mn mathvariant="normal">15</mml:mn></mml:msup><mml:mi mathvariant="normal">N</mml:mi></mml:mrow></mml:math></inline-formula> SP, <inline-formula><mml:math id="M199" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup><mml:mi mathvariant="normal">N</mml:mi></mml:mrow></mml:math></inline-formula>, and
<inline-formula><mml:math id="M200" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">18</mml:mn></mml:msup><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> of <inline-formula><mml:math id="M201" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> changed with soil moisture level in parallel
with each other (Fig. 2d, e, and f). We identified three moisture
ranges – differing slightly for each soil (Table 2) – that regulated
<inline-formula><mml:math id="M202" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> production pathways based on distinct SP, <inline-formula><mml:math id="M203" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup><mml:mi mathvariant="normal">N</mml:mi></mml:mrow></mml:math></inline-formula>, and <inline-formula><mml:math id="M204" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">18</mml:mn></mml:msup><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>
values (Fig. 2).</p>
      <p id="d1e3402">For each soil, the <inline-formula><mml:math id="M205" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup><mml:mi mathvariant="normal">N</mml:mi></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M206" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">18</mml:mn></mml:msup><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> values decreased in the same
soil moisture region in which the SP values decreased (Fig. 2d, e, and f). Based on the patterns for <inline-formula><mml:math id="M207" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> fluxes and SP, <inline-formula><mml:math id="M208" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup><mml:mi mathvariant="normal">N</mml:mi></mml:mrow></mml:math></inline-formula>, and
<inline-formula><mml:math id="M209" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">18</mml:mn></mml:msup><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> values as related to soil moisture (Fig. 2; Table 2), our results
visually indicate that there was a transition between nitrification-derived and
denitrification-derived <inline-formula><mml:math id="M210" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> production at between 64 % and 83 %, 58 % and 75 %,<?pagebreak page269?> and
63 % and 75 % WFPS for the Sutherland, Asquith, and Bradwell soils,
respectively.</p>
      <?pagebreak page270?><p id="d1e3484">Prior to the transition in <inline-formula><mml:math id="M211" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> production pathway, when the soil was
relatively dry, the SP values averaged 23.7 ‰, 23.3 ‰, and
21.7 ‰ from the Sutherland, Asquith, and Bradwell soils,
respectively. These values are in line with expected SP values attributed to
nitrification
(Denk
et al., 2017; Ostrom et al., 2010; Sutka et al., 2006; Toyoda et al., 2005).
Furthermore, the observed consistency among soil types – and the negligible
(near zero) slopes between WFPS and <inline-formula><mml:math id="M212" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi/><mml:mn mathvariant="normal">15</mml:mn></mml:msup><mml:mi mathvariant="normal">N</mml:mi></mml:mrow></mml:math></inline-formula> SP – suggests that average SPs
during nitrification are relatively insensitive to the rate of production or
associated <inline-formula><mml:math id="M213" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> accumulation. It is known that isotopic fractionation
governed by kinetic isotope effects occurs during the reaction sequence
<inline-formula><mml:math id="M214" display="inline"><mml:mrow class="chem"><mml:msubsup><mml:mi mathvariant="normal">NH</mml:mi><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup><mml:mo>→</mml:mo><mml:msub><mml:mi mathvariant="normal">NH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">OH</mml:mi><mml:mo>→</mml:mo><mml:mi mathvariant="normal">NOH</mml:mi><mml:mo>→</mml:mo><mml:mi mathvariant="normal">NO</mml:mi><mml:mo>→</mml:mo><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:mrow></mml:math></inline-formula> and
<inline-formula><mml:math id="M215" display="inline"><mml:mrow class="chem"><mml:msubsup><mml:mi mathvariant="normal">NH</mml:mi><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup><mml:mo>→</mml:mo><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>→</mml:mo><mml:mi mathvariant="normal">NO</mml:mi><mml:mo>→</mml:mo><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:mrow></mml:math></inline-formula>; however, oxidation
of NOH does not involve a primary kinetic isotope effect and thus should not
markedly affect SP (Popp et al., 2002).</p>
      <p id="d1e3600">During the transition from nitrification to denitrification, SP declined
rapidly in all soils (Fig. 2; Table 2). The lowest SP values were 2.0 ‰, 0.7 ‰,
and 14.4 ‰ for the Sutherland, Asquith, and Bradwell
soils, respectively. In general, sharp slopes characterized the decline in
SP values with increasing soil moisture during the transition; but the
Sutherland and Asquith soils had steeper slopes than the Bradwell soil
(Table 2). This difference was likely related to differences in soil
inorganic or mineralizable N availability  (Table 1) and possibly to
differences in the rates of denitrification.</p>
      <p id="d1e3603">After the transition to denitrification, the SP values increased slightly as
soil moisture increased (Table 2) – but more so for the Bradwell soil than for
the Sutherland and Asquith soils. This finding supports the sensitivity of
SP values to the degree of stepwise completion of denitrification (<inline-formula><mml:math id="M216" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>
reduction to <inline-formula><mml:math id="M217" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>). We hypothesize that the ratio of <inline-formula><mml:math id="M218" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> produced to
the <inline-formula><mml:math id="M219" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> reduced was lowest for the Bradwell soil. Contrary to the large
accrual of <inline-formula><mml:math id="M220" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> from the Sutherland and Asquith soils, the low
concentration of <inline-formula><mml:math id="M221" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> produced from the Bradwell soil likely favoured
complete reduction (i.e., tighter “hole in the pipe”) – causing the
Bradwell soil SP values to be the most sensitive to reduction of <inline-formula><mml:math id="M222" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>
after the transition to denitrification (Fig. 2; Table 2). Correspondingly,
using the mapping-model approach to calculate the fraction of
denitrified <inline-formula><mml:math id="M223" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> reduced to <inline-formula><mml:math id="M224" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>
(Lewicka-Szczebak et al., 2017), we estimated that
much larger fractions of <inline-formula><mml:math id="M225" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> were reduced to <inline-formula><mml:math id="M226" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> at 95 % WFPS in
the Bradwell soil (0.47) compared to the Sutherland or Asquith soils (0.13
to 0.14). The greater amounts of <inline-formula><mml:math id="M227" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> produced by the nutrient-rich
Sutherland and Asquith soils may have overwhelmed any reduction effect on
the SP of <inline-formula><mml:math id="M228" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>. Our findings attribute “<inline-formula><mml:math id="M229" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>-leaky” soils to excess
inorganic N or mineralization potential.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F3" specific-use="star"><?xmltex \currentcnt{3}?><label>Figure 3</label><caption><p id="d1e3786">Isotopomer map to determine the source partitioning
of <inline-formula><mml:math id="M230" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> derived from nitrification versus
denitrification using mean (<inline-formula><mml:math id="M231" display="inline"><mml:mrow><mml:mi>n</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">4</mml:mn></mml:mrow></mml:math></inline-formula>)
<inline-formula><mml:math id="M232" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi/><mml:mn mathvariant="normal">15</mml:mn></mml:msup><mml:mi mathvariant="normal">N</mml:mi></mml:mrow></mml:math></inline-formula> site preference (SP) and
<inline-formula><mml:math id="M233" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">18</mml:mn></mml:msup><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> of
<inline-formula><mml:math id="M234" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>. The linear mixed model approach was
based on Deppe et al. (2017) and Lewicka-Szczebak et al. (2017), but with
mixing line endmembers and reduction line slopes derived from our data.</p></caption>
          <?xmltex \igopts{width=455.244094pt}?><graphic xlink:href="https://soil.copernicus.org/articles/5/265/2019/soil-5-265-2019-f03.png"/>

        </fig>

</sec>
<sec id="Ch1.S3.SS3">
  <label>3.3</label><title>The hole in the pipe influences site preference</title>
      <p id="d1e3866">As alluded to above, the Bradwell results were most dissimilar to the other
soils. It is intriguing that the SP values for the Bradwell soil <inline-formula><mml:math id="M235" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>
never dropped below 14.4 ‰. While it is clear from the
pattern of <inline-formula><mml:math id="M236" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> fluxes and SP, <inline-formula><mml:math id="M237" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup><mml:mi mathvariant="normal">N</mml:mi></mml:mrow></mml:math></inline-formula>, and <inline-formula><mml:math id="M238" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">18</mml:mn></mml:msup><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> values (Fig. 2)
that <inline-formula><mml:math id="M239" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> production transitioned to denitrification as the soil water
content was increased (Table 2), it is curious that the SP values were not
lower (i.e., closer to 0 ‰) as earlier work demonstrated
for denitrification
(Denk
et al., 2017; Ostrom et al., 2010; Sutka et al., 2006; Toyoda et al., 2005;
Winther et al., 2018). Reasons for this discrepancy are as yet unclear, but
we are not alone in finding SP values above 0 ‰ that are
attributed to denitrification
(Winther et al.,
2018). Differences might be related to differences in microbial community
structure and activity, as suggested by Decock and Six (2013a). Also, it is
very likely that multiple processes underlying <inline-formula><mml:math id="M240" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> production and
consumption acted simultaneously to cause an SP value that was higher than expected
(Decock and Six, 2013a). Otherwise, <inline-formula><mml:math id="M241" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>
reduction to <inline-formula><mml:math id="M242" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> might have played a role that was larger than anticipated for
the Bradwell soil. Indeed, SP values within the expected range for bacterial
denitrification are known to be sensitive to the reduction of <inline-formula><mml:math id="M243" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> to
<inline-formula><mml:math id="M244" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>
(Deppe
et al., 2017; Jinuntuya-Nortman et al., 2008; Lewicka-Szczebak et al., 2014;
Ostrom et al., 2007; Well and Flessa, 2009). Despite similarities among
soils in the robust patterns of how SP values are influenced by soil
moisture (Fig. 2; Table 2), SP exhibited a significant (<inline-formula><mml:math id="M245" display="inline"><mml:mrow><mml:mi>p</mml:mi><mml:mi mathvariant="italic">&lt;</mml:mi><mml:mn mathvariant="normal">0.0001</mml:mn></mml:mrow></mml:math></inline-formula>)
soil by moisture region interaction. This finding agrees with
earlier suggestions that, at finer scales, the <inline-formula><mml:math id="M246" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi/><mml:mn mathvariant="normal">15</mml:mn></mml:msup><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> isotopic
signatures and SP values are likely regulated by the active soil microbial
community, process rates, and soil heterogeneity
(Decock and
Six, 2013a; Lewicka-Szczebak et al., 2014). Denitrification results in
cleavage of the covalent bond between the central N and O in <inline-formula><mml:math id="M247" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>, and
based on kinetic isotope fractionation, results in an increase in the
<inline-formula><mml:math id="M248" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi/><mml:mn mathvariant="normal">15</mml:mn></mml:msup><mml:mi mathvariant="normal">N</mml:mi></mml:mrow></mml:math></inline-formula> content of the <inline-formula><mml:math id="M249" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula> position of the residual <inline-formula><mml:math id="M250" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>, thereby
increasing the SP (Popp et al., 2002; Ostrom et
al., 2007). Thus, the increase in SP in response to <inline-formula><mml:math id="M251" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> reduction
results in a small (but important) shift away from the SP values associated
with the origins of denitrification (<inline-formula><mml:math id="M252" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">0</mml:mn></mml:mrow></mml:math></inline-formula> ‰) towards those of nitrification, i.e., 33 ‰
(Sutka et al.,
2006). Previously, the fractionation of SP due to <inline-formula><mml:math id="M253" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> reduction was
constrained to a variation of <inline-formula><mml:math id="M254" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>2 ‰ to
<inline-formula><mml:math id="M255" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>8 ‰
(Jinuntuya-Nortman
et al., 2008; Lewicka-Szczebak et al., 2014; Well and Flessa, 2009). Ostrom
et al. (2007) showed that the rate of reduction must be substantially
greater than 10 % of that of production to impact the SP estimates of
<inline-formula><mml:math id="M256" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> from denitrification by more than a few percent. Because it is
likely that <inline-formula><mml:math id="M257" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> consumption was greater than production for the
Bradwell soil when soil moisture exceeded 75 % WFPS, our results indicate
that the size of the hole in the pipe may influence denitrification SP to
a greater extent than previously documented.</p>
      <p id="d1e4148">For <inline-formula><mml:math id="M258" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> source identification, we adopted an isotopomer mixing approach
(Deppe
et al., 2017; Lewicka-Szczebak et al., 2017; Zou et al., 2014) and
constructed isotopomer maps (i.e., plots of SP vs.. <inline-formula><mml:math id="M259" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">18</mml:mn></mml:msup><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>). This
approach allowed us to estimate the impact of <inline-formula><mml:math id="M260" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> reduction to <inline-formula><mml:math id="M261" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>
on SP. Reduction slopes for our three soils averaged at 0.28, which is similar
to the literature-derived average of 0.35 or 0.33 used by Deppe et al. (2017) and Lewicka-Szczebak et al. (2017), respectively, though they varied
over a wide range, i.e., from 0.16 to 0.52 (Fig. 3). A high reduction slope,
such as that observed for the Bradwell soil, might be associated with the
magnitude of <inline-formula><mml:math id="M262" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> production relative to potential nitrous oxide
reductase activity or conditions that favour more complete stepwise
reduction of <inline-formula><mml:math id="M263" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> to <inline-formula><mml:math id="M264" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>. Whereas the reduction effect on SP might
be stronger than previously thought, it may only be observable when
conditions are favourable, as evidenced for the Bradwell soil. We echo
earlier proposals made by Ostrom<?pagebreak page271?> et al. (2007) and
suggest that the current knowledge and understanding of <inline-formula><mml:math id="M265" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi/><mml:mn mathvariant="normal">15</mml:mn></mml:msup><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>
isotopomers may have inherent biases due to methodological focus on high-flux scenarios – where the rates of <inline-formula><mml:math id="M266" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> reduction are minor and likely
not of sufficient magnitude to alter isotopomer and SP data. Relatively few
studies have focused on lower flux scenarios when the rates of <inline-formula><mml:math id="M267" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>
reduction relative to production may exert more of an influence on SP. Our
findings support the hypothesis that <inline-formula><mml:math id="M268" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> reduction is a minor process
influencing SP during conditions of high soil <inline-formula><mml:math id="M269" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> flux but may be more
important for conditions with low <inline-formula><mml:math id="M270" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> flux (Ostrom
et al., 2007).</p>
      <p id="d1e4322">Due to the wide range of reduction slopes observed in our study – and the
differences for how SP is influenced in conditions with high flux vs. low
flux – we argue that using a single average reduction slope is insufficient
for best predicting <inline-formula><mml:math id="M271" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> reduction. This finding echoes earlier work which
suggested that during soil conditions when processes of <inline-formula><mml:math id="M272" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> production
and reduction occur simultaneously, the reduction line approach may be
limited (Decock and Six, 2013b). It is recommended
that further research better quantify the conditions that promote <inline-formula><mml:math id="M273" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>
reduction for improved <inline-formula><mml:math id="M274" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> source predictions. This could be
particularly important for assessing microbial source pathways of <inline-formula><mml:math id="M275" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>
production and consumption across seasonal and spatial scales because
sustained periods of low flux are not uncommon.</p>
</sec>
<sec id="Ch1.S3.SS4">
  <label>3.4</label><title>Source pathway partitioning and modelling</title>
      <p id="d1e4398">Using the pooled data from the isotopomer maps to predict source partitions,
linear models were developed that fit the transitions for
nitrification-derived <inline-formula><mml:math id="M276" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> (<inline-formula><mml:math id="M277" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.65</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M278" display="inline"><mml:mrow><mml:mi>p</mml:mi><mml:mi mathvariant="italic">&lt;</mml:mi><mml:mn mathvariant="normal">0.001</mml:mn></mml:mrow></mml:math></inline-formula>) and
denitrification-derived <inline-formula><mml:math id="M279" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> (<inline-formula><mml:math id="M280" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.65</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M281" display="inline"><mml:mrow><mml:mi>p</mml:mi><mml:mi mathvariant="italic">&lt;</mml:mi><mml:mn mathvariant="normal">0.001</mml:mn></mml:mrow></mml:math></inline-formula>; Fig. 4) with coefficients of variation and root-mean-square errors of 0.10 and
0.20, respectively. The models predict that over a soil moisture range of 53 %
to 78 % WFPS, the source partitioning rapidly changed from nitrification-
to denitrification-dominated <inline-formula><mml:math id="M282" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> production. At soil moisture levels
<inline-formula><mml:math id="M283" display="inline"><mml:mrow><mml:mi mathvariant="italic">&lt;</mml:mi><mml:mn mathvariant="normal">53</mml:mn></mml:mrow></mml:math></inline-formula> % WFPS, <inline-formula><mml:math id="M284" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> was predominately attributed to
nitrification (<inline-formula><mml:math id="M285" display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mi mathvariant="normal">N</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula>) but thereafter decreased rapidly, according to
Eq. (6),
            <disp-formula id="Ch1.E6" content-type="numbered"><label>6</label><mml:math id="M286" display="block"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mi mathvariant="normal">N</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">3.19</mml:mn><mml:mo>-</mml:mo><mml:mn mathvariant="normal">0.041</mml:mn><mml:mi>x</mml:mi><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
          until a WFPS of 78 %. This result was mirrored by the increase in <inline-formula><mml:math id="M287" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>
attributed to denitrification at a WFPS of 53 % according to Eq. (7),
            <disp-formula id="Ch1.E7" content-type="numbered"><label>7</label><mml:math id="M288" display="block"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mi mathvariant="normal">D</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2.19</mml:mn><mml:mo>+</mml:mo><mml:mn mathvariant="normal">0.041</mml:mn><mml:mi>x</mml:mi><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
          until <inline-formula><mml:math id="M289" display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mi mathvariant="normal">D</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula> % at 78 % and higher WFPS. These relationships exemplify
the sensitivity of <inline-formula><mml:math id="M290" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> production pathways to soil moisture changes.
For instance, during the transition, a change in soil moisture as little as
10 % (i.e., from 55 % to 65 % WFPS) is predicted to lower
nitrification-derived <inline-formula><mml:math id="M291" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> production by 56 % but increase
denitrification-derived <inline-formula><mml:math id="M292" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> by more than 7-fold (Fig. 4).
Consequently, the linear models presented here may help other researchers
estimate <inline-formula><mml:math id="M293" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> source partitioning when soil moisture falls within the
transition from nitrification to denitrification.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F4"><?xmltex \currentcnt{4}?><label>Figure 4</label><caption><p id="d1e4665">Fraction of emitted
<inline-formula><mml:math id="M294" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> that was attributed to nitrification
(<inline-formula><mml:math id="M295" display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mi mathvariant="normal">N</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>; shaded grey area) or denitrification
(<inline-formula><mml:math id="M296" display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mi mathvariant="normal">D</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>; lined area) based on the isotopomer
mixing model (data points). Note: the dashed purple line denotes the
predicted <inline-formula><mml:math id="M297" display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mi mathvariant="normal">N</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> (Eq. 6); the solid black line
denotes the predicted <inline-formula><mml:math id="M298" display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mi mathvariant="normal">D</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> (Eq. 7).</p></caption>
          <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://soil.copernicus.org/articles/5/265/2019/soil-5-265-2019-f04.png"/>

        </fig>

      <?pagebreak page272?><p id="d1e4731">As a check, the soil-specific approach presented here was compared to the
independent endmember or slope approach commonly used by other researchers
(Deppe et al., 2017; Lewicka-Szczebak et al., 2017). Isotopomer maps were
calculated using independent literature-derived values (see Supplement Fig. S1), with
the endmembers set at <inline-formula><mml:math id="M299" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>2.4 to 34.4 for SP<inline-formula><mml:math id="M300" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">D</mml:mi></mml:msub></mml:math></inline-formula> to SP<inline-formula><mml:math id="M301" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">N</mml:mi></mml:msub></mml:math></inline-formula> and 11.1 to
43.0 for <inline-formula><mml:math id="M302" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">18</mml:mn></mml:msup><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mi mathvariant="normal">D</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> to <inline-formula><mml:math id="M303" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">18</mml:mn></mml:msup><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mi mathvariant="normal">N</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and a reduction slope of 0.33
(Lewicka-Szczebak et al., 2017). Using
the literature-derived endmembers overestimated the contribution of
denitrification-derived <inline-formula><mml:math id="M304" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> under very dry soil conditions (i.e., 20 % to
40 % WFPS) – indicating that up to 40 % of <inline-formula><mml:math id="M305" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> produced under these
conditions was a result of denitrification (Fig. S1) – a contradiction to
common knowledge (Butterbach-Bahl et al., 2013; Davidson et al. 1991). In
our case, <inline-formula><mml:math id="M306" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> source partitioning using soil-specific endmembers
provided an advantage over using independent endmembers because the
endmembers for the Bradwell soil were different from the literature-derived
values, likely due to real soil biological processes such as microbial
communities, the low rate of production, or soil heterogeneity
(Decock and
Six, 2013a; Lewicka-Szczebak et al., 2014). Nonetheless, we recommend that
future research aims to develop more advanced models that take into account
variability or more nuanced isotope effects.</p>
      <p id="d1e4832">Clearly, soil moisture change during the transition is a key regulator of
which pathway dominantly produces <inline-formula><mml:math id="M307" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> – be it nitrification,
denitrification, or a mixture of both. Our results largely support the
foundational studies that established the relationship between soil moisture
and <inline-formula><mml:math id="M308" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> emissions (Davidson,
1991; Linn and Doran, 1984); however, we provide a method that moves beyond
just inferring <inline-formula><mml:math id="M309" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> source pathways towards quantifying the pathway
contributions over a range of soil moisture – and does so without having to
add a <inline-formula><mml:math id="M310" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi/><mml:mn mathvariant="normal">15</mml:mn></mml:msup><mml:mi mathvariant="normal">N</mml:mi></mml:mrow></mml:math></inline-formula> label.</p>
</sec>
</sec>
<sec id="Ch1.S4" sec-type="conclusions">
  <label>4</label><title>Conclusions</title>
      <p id="d1e4895">Determining the production pathways of soil-derived <inline-formula><mml:math id="M311" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> is a worthwhile
goal, as there is potential to manage soils in ways that lead to reduced
nitrification or denitrification during periods of risk for <inline-formula><mml:math id="M312" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>
loss – thereby mitigating emissions of a potent greenhouse gas. We show that
isotopomer data have the potential to provide progress towards this goal.
Measuring <inline-formula><mml:math id="M313" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi/><mml:mn mathvariant="normal">15</mml:mn></mml:msup><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> isotopomers enabled a more precise evaluation of
the relationship between soil moisture and <inline-formula><mml:math id="M314" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> production, and we
present a source fraction model for key soil moisture ranges. In general,
our results support earlier assumptions about the relationships between
moisture and <inline-formula><mml:math id="M315" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> production pathways but can help move beyond inferring
towards quantifying relative source pathways. Clearly, soil moisture level
during “the transition zone” is a key regulator of which pathway
predominates – be it nitrification, denitrification, or a mixture of both.
Hence, the models presented herein should be useful for other researchers in
estimating contributions of nitrification versus denitrification when soil
WFPS ranges from 53 % to 78 %.</p>
      <p id="d1e4967">One known caveat when using the isotopomer method for source pathway
quantification is the isotope effect of <inline-formula><mml:math id="M316" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> reduction. Previous
researchers have attempted to address this limitation by using an average
reduction slope and linear mixed model approach, but due to the wide range
of reduction slopes observed in our study – and the differences for how
denitrification SP is influenced in conditions with high <inline-formula><mml:math id="M317" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> flux vs. low
flux – we argue that using a single average reduction slope is insufficient
for best predicting <inline-formula><mml:math id="M318" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> reduction. It is recommended that further research
better quantify the conditions which influence <inline-formula><mml:math id="M319" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> reduction and its
sensitivity on denitrification SP values for improved <inline-formula><mml:math id="M320" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> source
predictions. The creation of larger isotope databases would contribute to
the development of more advanced models that take into account variability
or more nuanced isotope effects.</p>
</sec>

      
      </body>
    <back><notes notes-type="dataavailability"><title>Data availability</title>

      <p id="d1e5040">The data that support the findings of this study are available by request from the corresponding author (Kate Congreves).</p>
  </notes><app-group>
        <supplementary-material position="anchor"><p id="d1e5043">The supplement related to this article is available online at: <inline-supplementary-material xlink:href="https://doi.org/10.5194/soil-5-265-2019-supplement" xlink:title="pdf">https://doi.org/10.5194/soil-5-265-2019-supplement</inline-supplementary-material>.</p></supplementary-material>
        </app-group><notes notes-type="authorcontribution"><title>Author contributions</title>

      <p id="d1e5052">KAC and REF designed the experiment, and TP carried it out. KAC prepared the
paper, with contributions from REF and TP.</p>
  </notes><notes notes-type="competinginterests"><title>Competing interests</title>

      <p id="d1e5058">The authors declare that they have no conflict of interest.</p>
  </notes><ack><title>Acknowledgements</title><p id="d1e5064">Richard E. Farrell is the co-director of the
Prairie Environmental Agronomy Research Laboratory (PEARL) and director of
the agricultural Greenhouse Gas Analysis Laboratory (agGAL), which provided
analytical support for this project. The authors are grateful to Frank Krijnen and Darin Richman for technical help in the lab. Thank you to  J. Diane Knight and  Melissa M. Arcand for reviewing early drafts of the
paper.</p></ack><notes notes-type="financialsupport"><title>Financial support</title>

      <?pagebreak page273?><p id="d1e5069">This research has been supported by the University of Saskatchewan College of Agriculture and Bioresources via a Martin Agricultural Trust Fund award to Katelyn A. Congreves and Richard E. Farrell (grant no. 349252) and by the Natural Sciences and Engineering Research Council of Canada via a Discovery Grant award to Katelyn A. Congreves (grant no. RGPIN 2018-04953).</p>
  </notes><notes notes-type="reviewstatement"><title>Review statement</title>

      <p id="d1e5075">This paper was edited by Steven Sleutel and reviewed by two anonymous referees.</p>
  </notes><ref-list>
    <title>References</title>

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    <!--<article-title-html>A new look at an old concept: using <sup>15</sup>N<sub>2</sub>O isotopomers to understand the relationship between soil moisture and N<sub>2</sub>O production pathways</article-title-html>
<abstract-html><p>Understanding the production pathways of potent greenhouse gases, such as
nitrous oxide (N<sub>2</sub>O), is essential for accurate flux prediction and for
developing effective adaptation and mitigation strategies in response to
climate change. Yet there remain surprising gaps in our understanding and
precise quantification of the underlying production pathways – such as the
relationship between soil moisture and N<sub>2</sub>O production pathways. A
powerful, but arguably underutilized, approach for quantifying the relative
contribution of nitrification and denitrification to N<sub>2</sub>O production
involves determining <sup>15</sup>N<sub>2</sub>O isotopomers and <sup>15</sup>N site
preference (SP) via spectroscopic techniques. Using one such technique, we
conducted a short-term incubation where N<sub>2</sub>O production and
<sup>15</sup>N<sub>2</sub>O isotopomers were measured 24&thinsp;h after soil moisture
treatments of 40&thinsp;% to 105&thinsp;% water-filled pore space (WFPS) were established
for each of three soils that differed in nutrient levels, organic matter,
and texture. Relatively low N<sub>2</sub>O fluxes and high SP values indicted
nitrification during dry soil conditions, whereas at higher soil moisture,
peak N<sub>2</sub>O emissions coincided with a sharp decline in SP, indicating
denitrification. This pattern supports the classic N<sub>2</sub>O production
curves from nitrification and denitrification as inferred by earlier
research; however, our isotopomer data enabled the quantification of source
partitioning for either pathway. At soil moisture levels &lt;&thinsp;53&thinsp;%
WFPS, the fraction of N<sub>2</sub>O attributed to nitrification (<i>F</i><sub>N</sub>)
predominated but thereafter decreased rapidly with increasing soil moisture
(<i>x</i>), according to <i>F</i><sub>N</sub> = 3.19−0.041<i>x</i>, until a WFPS of 78&thinsp;% was reached. Simultaneously, from WFPS of 53&thinsp;% to
78&thinsp;%, the fraction of N<sub>2</sub>O that was attributed to denitrification
(<i>F</i><sub>D</sub>) was modelled as
<i>F</i><sub>D</sub> = −2.19+0.041<i>x</i>; at moisture levels of &gt;&thinsp;78&thinsp;%, denitrification completely
dominated. Clearly, the soil moisture level during transition is a key
regulator of N<sub>2</sub>O production pathways. The presented equations may be
helpful for other researchers in estimating N<sub>2</sub>O source partitioning when
soil moisture falls within the transition from nitrification to
denitrification.</p></abstract-html>
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